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From: metabase:user:30f4dfbe-2aae-11df-837a-5e0a49663a4f
Subject: FAIL Shatterproof-0.08 v5.12.4 Debian GNU/kFreeBSD
Date: 2013-05-23T16:39:34Z
This distribution has been tested as part of the CPAN Testers
project, supporting the Perl programming language. See
http://wiki.cpantesters.org/ for more information or email
questions to cpan-testers-discuss@perl.org
--
Dear Shaylan Govind,
This is a computer-generated report for Shatterproof-0.08
on perl 5.12.4, created by CPAN-Reporter-1.2010.
Thank you for uploading your work to CPAN. However, there was a problem
testing your distribution.
If you think this report is invalid, please consult the CPAN Testers Wiki
for suggestions on how to avoid getting FAIL reports for missing library
or binary dependencies, unsupported operating systems, and so on:
http://wiki.cpantesters.org/wiki/CPANAuthorNotes
Sections of this report:
* Tester comments
* Program output
* Prerequisites
* Environment and other context
------------------------------
TESTER COMMENTS
------------------------------
Additional comments from tester:
this report is from an automated smoke testing program
and was not reviewed by a human for accuracy
------------------------------
PROGRAM OUTPUT
------------------------------
Output from '/usr/bin/make test':
PERL_DL_NONLAZY=1 /home/njh/perl5/perlbrew/perls/perl-5.12.4/bin/perl "-MExtUtils::Command::MM" "-e" "test_harness(0, 'blib/lib', 'blib/arch')" t/*.t
t/analyze_cnv_data.t ............................... ok
t/analyze_likely_regions.t .........................
Failed 1/2 subtests
t/analyze_trans_data.t ............................. ok
t/calculate_chromosome_localization.t ..............
Failed 14/15 subtests
t/calculate_genome_localization.t .................. ok
t/calculate_interchromosomal_translocation_rate.t .. ok
t/check_copy_number_count.t ........................ ok
t/check_copy_number_switches.t ..................... ok
t/standard_deviation_and_mean.t .................... ok
Test Summary Report
-------------------
t/analyze_likely_regions.t (Wstat: 9 Tests: 1 Failed: 0)
Non-zero wait status: 9
Parse errors: Bad plan. You planned 2 tests but ran 1.
t/calculate_chromosome_localization.t (Wstat: 9 Tests: 1 Failed: 0)
Non-zero wait status: 9
Parse errors: Bad plan. You planned 15 tests but ran 1.
Files=9, Tests=50, 202 wallclock secs ( 0.20 usr 0.17 sys + 146.53 cusr 42.53 csys = 189.43 CPU)
Result: FAIL
Failed 2/9 test programs. 0/50 subtests failed.
make: *** [test_dynamic] Error 255
------------------------------
PREREQUISITES
------------------------------
Prerequisite modules loaded:
requires:
Module Need Have
------------------------- ---- -----
File::Basename 2 2.78
JSON 2 2.57
List::Util 1 1.27
POSIX 1 1.19
Statistics::Distributions 1.02 1.02
Test::Deep 0 0.110
Test::Exception 0 0.31
Test::More 0 0.98
build_requires:
Module Need Have
------------------------- ---- -----
ExtUtils::MakeMaker 0 6.66
configure_requires:
Module Need Have
------------------------- ---- -----
ExtUtils::MakeMaker 0 6.66
------------------------------
ENVIRONMENT AND OTHER CONTEXT
------------------------------
Environment variables:
AUTOMATED_TESTING = 1
LANG =
LANGUAGE = en_GB:en
MANPATH_WITHOUT_PERLBREW = /usr/local/man:/usr/local/share/man:/usr/share/man
PATH = /home/njh/perl5/perlbrew/bin:/home/njh/perl5/perlbrew/perls/perl-5.12.4/bin:/home/njh/perl5/perlbrew/bin:/usr/local/bin:/usr/bin:/bin:/usr/local/games:/usr/games:/home/njh/bin:/usr/perl5/bin
PATH_WITHOUT_PERLBREW = /usr/local/bin:/usr/bin:/bin:/usr/local/games:/usr/games
PERL5LIB = /home/njh/.cpan/build/Statistics-Distributions-1.02-DGVJfC/blib/arch:/home/njh/.cpan/build/Statistics-Distributions-1.02-DGVJfC/blib/lib
PERL5OPT =
PERL5_CPANPLUS_IS_RUNNING = 27178
PERL5_CPAN_IS_RUNNING = 27178
PERL5_CPAN_IS_RUNNING_IN_RECURSION = 3943,27178
PERLBREW_BASHRC_VERSION = 0.50
PERLBREW_HOME = /home/njh/.perlbrew
PERLBREW_LIB =
PERLBREW_MANPATH = /home/njh/perl5/perlbrew/perls/perl-5.12.4/man
PERLBREW_PATH = /home/njh/perl5/perlbrew/bin:/home/njh/perl5/perlbrew/perls/perl-5.12.4/bin
PERLBREW_PERL = perl-5.12.4
PERLBREW_ROOT = /home/njh/perl5/perlbrew
PERLBREW_VERSION = 0.50
PERL_CR_SMOKER_CURRENT = Shatterproof-0.08
PERL_CR_SMOKER_RUNONCE = 1
PERL_EXTUTILS_AUTOINSTALL = --defaultdeps
PERL_MM_USE_DEFAULT = 1
SHELL = /bin/bash
TERM = xterm
TMPDIR = /tmp
Perl special variables (and OS-specific diagnostics, for MSWin32):
$^X = /home/njh/perl5/perlbrew/perls/perl-5.12.4/bin/perl
$UID/$EUID = 1000 / 1000
$GID = 1000 1000 24 25 29 30 44 46
$EGID = 1000 1000 24 25 29 30 44 46
Perl module toolchain versions installed:
Module Have
------------------- --------
CPAN 2.00
CPAN::Meta 2.130880
Cwd 3.40
ExtUtils::CBuilder 0.280205
ExtUtils::Command 1.17
ExtUtils::Install 1.55
ExtUtils::MakeMaker 6.66
ExtUtils::Manifest 1.61
ExtUtils::ParseXS 3.18
File::Spec 3.40
JSON 2.57
JSON::PP 2.27202
Module::Build 0.4005
Module::Signature 0.70
Parse::CPAN::Meta 1.4404
Test::Harness 3.26
Test::More 0.98
YAML 0.84
YAML::Syck 1.22
version 0.9901
--
Summary of my perl5 (revision 5 version 12 subversion 4) configuration:
Platform:
osname=gnukfreebsd, osvers=9.0-2-amd64, archname=x86_64-gnukfreebsd-thread-multi
uname='gnukfreebsd qemu.bandsman.co.uk 9.0-2-amd64 #0 mon jul 30 22:02:44 utc 2012 x86_64 amd64 intel(r) core(tm)2 quad cpu q6600 @ 2.40ghz gnukfreebsd '
config_args='-de -Dprefix=/home/njh/perl5/perlbrew/perls/perl-5.12.4 -Duseithreads -Dusemultiplicity -Accflags=-O2 -W -Wformat=2 -Wswitch -Wshadow -Wwrite-strings -Wuninitialized -Wall -pipe -mtune=native -march=native -fomit-frame-pointer -msse2 -msse3 -msse -mmmx -mfpmath=sse -pedantic -D_FORTIFY_SOURCE=2 -Wpointer-arith -Wstrict-prototypes -fstack-protector -Wstack-protector -Wextra -Wbad-function-cast -Wcast-align -Wcast-qual -Wdisabled-optimization -Wendif-labels -Wfloat-equal -Wformat-nonliteral -Winline -Wmissing-declarations -Wmissing-prototypes -Wnested-externs -Wpointer-arith -Wundef -Wformat-security -Aeval:scriptdir=/home/njh/perl5/perlbrew/perls/perl-5.12.4/bin'
hint=recommended, useposix=true, d_sigaction=define
useithreads=define, usemultiplicity=define
useperlio=define, d_sfio=undef, uselargefiles=define, usesocks=undef
use64bitint=define, use64bitall=define, uselongdouble=undef
usemymalloc=n, bincompat5005=undef
Compiler:
cc='cc', ccflags ='-D_REENTRANT -D_GNU_SOURCE -DTHREADS_HAVE_PIDS -O2 -W -Wformat=2 -Wswitch -Wshadow -Wwrite-strings -Wuninitialized -Wall -pipe -mtune=native -march=native -fomit-frame-pointer -msse2 -msse3 -msse -mmmx -mfpmath=sse -pedantic -D_FORTIFY_SOURCE=2 -Wpointer-arith -Wstrict-prototypes -fstack-protector -Wstack-protector -Wextra -Wbad-function-cast -Wcast-align -Wcast-qual -Wdisabled-optimization -Wendif-labels -Wfloat-equal -Wformat-nonliteral -Winline -Wmissing-declarations -Wmissing-prototypes -Wnested-externs -Wpointer-arith -Wundef -Wformat-security -fno-strict-aliasing -I/usr/local/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64',
optimize='-O2',
cppflags='-D_REENTRANT -D_GNU_SOURCE -DTHREADS_HAVE_PIDS -O2 -W -Wformat=2 -Wswitch -Wshadow -Wwrite-strings -Wuninitialized -Wall -pipe -mtune=native -march=native -fomit-frame-pointer -msse2 -msse3 -msse -mmmx -mfpmath=sse -pedantic -D_FORTIFY_SOURCE=2 -Wpointer-arith -Wstrict-prototypes -fstack-protector -Wstack-protector -Wextra -Wbad-function-cast -Wcast-align -Wcast-qual -Wdisabled-optimization -Wendif-labels -Wfloat-equal -Wformat-nonliteral -Winline -Wmissing-declarations -Wmissing-prototypes -Wnested-externs -Wpointer-arith -Wundef -Wformat-security -fno-strict-aliasing -I/usr/local/include'
ccversion='', gccversion='4.7.1', gccosandvers=''
intsize=4, longsize=8, ptrsize=8, doublesize=8, byteorder=12345678
d_longlong=define, longlongsize=8, d_longdbl=define, longdblsize=16
ivtype='long', ivsize=8, nvtype='double', nvsize=8, Off_t='off_t', lseeksize=8
alignbytes=8, prototype=define
Linker and Libraries:
ld='cc', ldflags =' -fstack-protector -L/usr/local/lib'
libpth=/usr/local/lib /lib/x86_64-kfreebsd-gnu /lib/../lib /usr/lib/x86_64-kfreebsd-gnu /usr/lib/../lib /lib /usr/lib
libs=-lnsl -lgdbm -ldb -ldl -lm -lcrypt -lutil -lpthread -lc -lgdbm_compat
perllibs=-lnsl -ldl -lm -lcrypt -lutil -lpthread -lc
libc=, so=so, useshrplib=false, libperl=libperl.a
gnulibc_version='2.13'
Dynamic Linking:
dlsrc=dl_dlopen.xs, dlext=so, d_dlsymun=undef, ccdlflags='-Wl,-E'
cccdlflags='-fpic', lddlflags='-shared -L/usr/local/lib -fstack-protector'
Characteristics of this binary (from libperl):
Compile-time options: MULTIPLICITY PERL_DONT_CREATE_GVSV
PERL_IMPLICIT_CONTEXT PERL_MALLOC_WRAP
THREADS_HAVE_PIDS USE_64_BIT_ALL USE_64_BIT_INT
USE_ITHREADS USE_LARGE_FILES USE_PERLIO USE_PERL_ATOF
USE_REENTRANT_API
Built under gnukfreebsd
Compiled at Sep 3 2012 13:55:17
%ENV:
PERL5LIB="/home/njh/.cpan/build/Statistics-Distributions-1.02-DGVJfC/blib/arch:/home/njh/.cpan/build/Statistics-Distributions-1.02-DGVJfC/blib/lib"
PERL5OPT=""
PERL5_CPANPLUS_IS_RUNNING="27178"
PERL5_CPAN_IS_RUNNING="27178"
PERL5_CPAN_IS_RUNNING_IN_RECURSION="3943,27178"
PERLBREW_BASHRC_VERSION="0.50"
PERLBREW_HOME="/home/njh/.perlbrew"
PERLBREW_LIB=""
PERLBREW_MANPATH="/home/njh/perl5/perlbrew/perls/perl-5.12.4/man"
PERLBREW_PATH="/home/njh/perl5/perlbrew/bin:/home/njh/perl5/perlbrew/perls/perl-5.12.4/bin"
PERLBREW_PERL="perl-5.12.4"
PERLBREW_ROOT="/home/njh/perl5/perlbrew"
PERLBREW_VERSION="0.50"
PERL_CR_SMOKER_CURRENT="Shatterproof-0.08"
PERL_CR_SMOKER_RUNONCE="1"
PERL_EXTUTILS_AUTOINSTALL="--defaultdeps"
PERL_MM_USE_DEFAULT="1"
@INC:
/home/njh/.cpan/build/Statistics-Distributions-1.02-DGVJfC/blib/arch
/home/njh/.cpan/build/Statistics-Distributions-1.02-DGVJfC/blib/lib
/home/njh/perl5/perlbrew/perls/perl-5.12.4/lib/site_perl/5.12.4/x86_64-gnukfreebsd-thread-multi
/home/njh/perl5/perlbrew/perls/perl-5.12.4/lib/site_perl/5.12.4
/home/njh/perl5/perlbrew/perls/perl-5.12.4/lib/5.12.4/x86_64-gnukfreebsd-thread-multi
/home/njh/perl5/perlbrew/perls/perl-5.12.4/lib/5.12.4
.