BioPerl-Run v1.007003 Perl 5 v5.22.2 x86_64-linux
- Status
- Fail
- From
- Slaven Rezić (SREZIC)
- Dist
-
BioPerl-Run v1.007003
- Platform
- Perl 5 v5.22.2 x86_64-linux
- Date
- 2019-02-08 20:08:28
- ID
- 4c8d1270-2bdd-11e9-aa26-9fe1c07ade3c
This distribution has been tested as part of the CPAN Testers
project, supporting the Perl programming language. See
http://wiki.cpantesters.org/ for more information or email
questions to cpan-testers-discuss@perl.org
--
Dear Christopher Fields,
This is a computer-generated report for BioPerl-Run-1.007003
on perl 5.22.2, created by CPAN-Reporter-1.2018.
Thank you for uploading your work to CPAN. However, there was a problem
testing your distribution.
If you think this report is invalid, please consult the CPAN Testers Wiki
for suggestions on how to avoid getting FAIL reports for missing library
or binary dependencies, unsupported operating systems, and so on:
http://wiki.cpantesters.org/wiki/CPANAuthorNotes
Sections of this report:
* Tester comments
* Program output
* Prerequisites
* Environment and other context
------------------------------
TESTER COMMENTS
------------------------------
Additional comments from tester:
none provided
------------------------------
PROGRAM OUTPUT
------------------------------
Output from './Build test':
# Failed test 'use Bio::Tools::Run::Alignment::Amap;'
# at t/Amap.t line 10.
# Tried to use 'Bio::Tools::Run::Alignment::Amap'.
# Error: Can't locate Bio/Tools/Run/WrapperBase.pm in @INC (you may need to install the Bio::Tools::Run::WrapperBase module) (@INC contains: /home/cpansand/.cpan/build/2019020820/BioPerl-Run-1.007003-3/blib/lib /home/cpansand/.cpan/build/2019020820/BioPerl-Run-1.007003-3/blib/arch /home/cpansand/.cpan/build/2019020820/BioPerl-Run-1.007003-3/_build/lib /opt/perl-5.22.2/lib/site_perl/5.22.2/x86_64-linux /opt/perl-5.22.2/lib/site_perl/5.22.2 /opt/perl-5.22.2/lib/5.22.2/x86_64-linux /opt/perl-5.22.2/lib/5.22.2 .) at /home/cpansand/.cpan/build/2019020820/BioPerl-Run-1.007003-3/blib/lib/Bio/Tools/Run/Alignment/Amap.pm line 156.
# BEGIN failed--compilation aborted at /home/cpansand/.cpan/build/2019020820/BioPerl-Run-1.007003-3/blib/lib/Bio/Tools/Run/Alignment/Amap.pm line 156.
# Compilation failed in require at t/Amap.t line 10.
# BEGIN failed--compilation aborted at t/Amap.t line 10.
Can't locate object method "new" via package "Bio::Tools::Run::Alignment::Amap" at t/Amap.t line 38.
# Looks like your test exited with 255 just after 4.
t/Amap.t ......................
Dubious, test returned 255 (wstat 65280, 0xff00)
Failed 15/18 subtests
t/AnalysisFactory_soap.t ...... skipped: Network tests have not been requested
t/Analysis_soap.t ............. skipped: Network tests have not been requested
t/BEDTools.t .................. skipped: The optional module Bio::Tools::Run::BEDTools (or dependencies thereof) was not installed
# Failed test 'use Bio::Tools::Run::Alignment::Blat;'
# at t/Blat.t line 10.
# Tried to use 'Bio::Tools::Run::Alignment::Blat'.
# Error: Base class package "Bio::Tools::Run::WrapperBase" is empty.
# (Perhaps you need to 'use' the module which defines that package first,
# or make that module available in @INC (@INC contains: /home/cpansand/.cpan/build/2019020820/BioPerl-Run-1.007003-3/blib/lib /home/cpansand/.cpan/build/2019020820/BioPerl-Run-1.007003-3/blib/arch /home/cpansand/.cpan/build/2019020820/BioPerl-Run-1.007003-3/_build/lib /opt/perl-5.22.2/lib/site_perl/5.22.2/x86_64-linux /opt/perl-5.22.2/lib/site_perl/5.22.2 /opt/perl-5.22.2/lib/5.22.2/x86_64-linux /opt/perl-5.22.2/lib/5.22.2 .).
# at /home/cpansand/.cpan/build/2019020820/BioPerl-Run-1.007003-3/blib/lib/Bio/Tools/Run/Alignment/Blat.pm line 92.
# BEGIN failed--compilation aborted at /home/cpansand/.cpan/build/2019020820/BioPerl-Run-1.007003-3/blib/lib/Bio/Tools/Run/Alignment/Blat.pm line 92.
# Compilation failed in require at t/Blat.t line 10.
# BEGIN failed--compilation aborted at t/Blat.t line 10.
Can't locate object method "new" via package "Bio::Tools::Run::Alignment::Blat" at t/Blat.t line 18.
# Looks like your test exited with 255 just after 3.
t/Blat.t ......................
Dubious, test returned 255 (wstat 65280, 0xff00)
Failed 37/39 subtests
# Failed test 'use Bio::Tools::Run::Coil;'
# at t/Coil.t line 10.
# Tried to use 'Bio::Tools::Run::Coil'.
# Error: Can't locate Bio/Tools/Run/WrapperBase.pm in @INC (you may need to install the Bio::Tools::Run::WrapperBase module) (@INC contains: /home/cpansand/.cpan/build/2019020820/BioPerl-Run-1.007003-3/blib/lib /home/cpansand/.cpan/build/2019020820/BioPerl-Run-1.007003-3/blib/arch /home/cpansand/.cpan/build/2019020820/BioPerl-Run-1.007003-3/_build/lib /opt/perl-5.22.2/lib/site_perl/5.22.2/x86_64-linux /opt/perl-5.22.2/lib/site_perl/5.22.2 /opt/perl-5.22.2/lib/5.22.2/x86_64-linux /opt/perl-5.22.2/lib/5.22.2 .) at /home/cpansand/.cpan/build/2019020820/BioPerl-Run-1.007003-3/blib/lib/Bio/Tools/Run/Coil.pm line 103.
# BEGIN failed--compilation aborted at /home/cpansand/.cpan/build/2019020820/BioPerl-Run-1.007003-3/blib/lib/Bio/Tools/Run/Coil.pm line 103.
# Compilation failed in require at t/Coil.t line 10.
# BEGIN failed--compilation aborted at t/Coil.t line 10.
Can't locate object method "new" via package "Bio::Tools::Run::Coil" at t/Coil.t line 15.
# Looks like your test exited with 255 just after 2.
t/Coil.t ......................
Dubious, test returned 255 (wstat 65280, 0xff00)
Failed 5/6 subtests
# Failed test 'use Bio::Tools::Run::Phylo::Phylip::Consense;'
# at t/Consense.t line 10.
# Tried to use 'Bio::Tools::Run::Phylo::Phylip::Consense'.
# Error: Can't locate Bio/Tools/Run/WrapperBase.pm in @INC (you may need to install the Bio::Tools::Run::WrapperBase module) (@INC contains: /home/cpansand/.cpan/build/2019020820/BioPerl-Run-1.007003-3/blib/lib /home/cpansand/.cpan/build/2019020820/BioPerl-Run-1.007003-3/blib/arch /home/cpansand/.cpan/build/2019020820/BioPerl-Run-1.007003-3/_build/lib /opt/perl-5.22.2/lib/site_perl/5.22.2/x86_64-linux /opt/perl-5.22.2/lib/site_perl/5.22.2 /opt/perl-5.22.2/lib/5.22.2/x86_64-linux /opt/perl-5.22.2/lib/5.22.2 .) at /home/cpansand/.cpan/build/2019020820/BioPerl-Run-1.007003-3/blib/lib/Bio/Tools/Run/Phylo/Phylip/Base.pm line 92.
# BEGIN failed--compilation aborted at /home/cpansand/.cpan/build/2019020820/BioPerl-Run-1.007003-3/blib/lib/Bio/Tools/Run/Phylo/Phylip/Base.pm line 92.
# Compilation failed in require at /home/cpansand/.cpan/build/2019020820/BioPerl-Run-1.007003-3/blib/lib/Bio/Tools/Run/Phylo/Phylip/Consense.pm line 208.
# BEGIN failed--compilation aborted at /home/cpansand/.cpan/build/2019020820/BioPerl-Run-1.007003-3/blib/lib/Bio/Tools/Run/Phylo/Phylip/Consense.pm line 208.
# Compilation failed in require at t/Consense.t line 10.
# BEGIN failed--compilation aborted at t/Consense.t line 10.
Can't locate object method "new" via package "Bio::Tools::Run::Phylo::Phylip::Consense" at t/Consense.t line 16.
# Looks like your test exited with 255 just after 2.
t/Consense.t ..................
Dubious, test returned 255 (wstat 65280, 0xff00)
Failed 7/8 subtests
# Failed test 'use Bio::Tools::Run::Alignment::DBA;'
# at t/DBA.t line 9.
# Tried to use 'Bio::Tools::Run::Alignment::DBA'.
# Error: Can't locate Bio/Tools/Run/WrapperBase.pm in @INC (you may need to install the Bio::Tools::Run::WrapperBase module) (@INC contains: /home/cpansand/.cpan/build/2019020820/BioPerl-Run-1.007003-3/blib/lib /home/cpansand/.cpan/build/2019020820/BioPerl-Run-1.007003-3/blib/arch /home/cpansand/.cpan/build/2019020820/BioPerl-Run-1.007003-3/_build/lib /opt/perl-5.22.2/lib/site_perl/5.22.2/x86_64-linux /opt/perl-5.22.2/lib/site_perl/5.22.2 /opt/perl-5.22.2/lib/5.22.2/x86_64-linux /opt/perl-5.22.2/lib/5.22.2 .) at /home/cpansand/.cpan/build/2019020820/BioPerl-Run-1.007003-3/blib/lib/Bio/Tools/Run/Alignment/DBA.pm line 109.
# BEGIN failed--compilation aborted at /home/cpansand/.cpan/build/2019020820/BioPerl-Run-1.007003-3/blib/lib/Bio/Tools/Run/Alignment/DBA.pm line 109.
# Compilation failed in require at t/DBA.t line 9.
# BEGIN failed--compilation aborted at t/DBA.t line 9.
Can't locate object method "new" via package "Bio::Tools::Run::Alignment::DBA" at t/DBA.t line 17.
# Looks like your test exited with 255 just after 4.
t/DBA.t .......................
Dubious, test returned 255 (wstat 65280, 0xff00)
Failed 15/18 subtests
# Failed test 'use Bio::Tools::Run::Phylo::Phylip::DrawGram;'
# at t/DrawGram.t line 10.
# Tried to use 'Bio::Tools::Run::Phylo::Phylip::DrawGram'.
# Error: Can't locate Bio/Tools/Run/WrapperBase.pm in @INC (you may need to install the Bio::Tools::Run::WrapperBase module) (@INC contains: /home/cpansand/.cpan/build/2019020820/BioPerl-Run-1.007003-3/blib/lib /home/cpansand/.cpan/build/2019020820/BioPerl-Run-1.007003-3/blib/arch /home/cpansand/.cpan/build/2019020820/BioPerl-Run-1.007003-3/_build/lib /opt/perl-5.22.2/lib/site_perl/5.22.2/x86_64-linux /opt/perl-5.22.2/lib/site_perl/5.22.2 /opt/perl-5.22.2/lib/5.22.2/x86_64-linux /opt/perl-5.22.2/lib/5.22.2 .) at /home/cpansand/.cpan/build/2019020820/BioPerl-Run-1.007003-3/blib/lib/Bio/Tools/Run/Phylo/Phylip/Base.pm line 92.
# BEGIN failed--compilation aborted at /home/cpansand/.cpan/build/2019020820/BioPerl-Run-1.007003-3/blib/lib/Bio/Tools/Run/Phylo/Phylip/Base.pm line 92.
# Compilation failed in require at /home/cpansand/.cpan/build/2019020820/BioPerl-Run-1.007003-3/blib/lib/Bio/Tools/Run/Phylo/Phylip/DrawGram.pm line 81.
# BEGIN failed--compilation aborted at /home/cpansand/.cpan/build/2019020820/BioPerl-Run-1.007003-3/blib/lib/Bio/Tools/Run/Phylo/Phylip/DrawGram.pm line 81.
# Compilation failed in require at t/DrawGram.t line 10.
# BEGIN failed--compilation aborted at t/DrawGram.t line 10.
Can't locate object method "new" via package "Bio::Tools::Run::Phylo::Phylip::DrawGram" at t/DrawGram.t line 17.
# Looks like your test exited with 255 just after 2.
t/DrawGram.t ..................
Dubious, test returned 255 (wstat 65280, 0xff00)
Failed 5/6 subtests
# Failed test 'use Bio::Tools::Run::Phylo::Phylip::DrawTree;'
# at t/DrawTree.t line 10.
# Tried to use 'Bio::Tools::Run::Phylo::Phylip::DrawTree'.
# Error: Can't locate Bio/Tools/Run/WrapperBase.pm in @INC (you may need to install the Bio::Tools::Run::WrapperBase module) (@INC contains: /home/cpansand/.cpan/build/2019020820/BioPerl-Run-1.007003-3/blib/lib /home/cpansand/.cpan/build/2019020820/BioPerl-Run-1.007003-3/blib/arch /home/cpansand/.cpan/build/2019020820/BioPerl-Run-1.007003-3/_build/lib /opt/perl-5.22.2/lib/site_perl/5.22.2/x86_64-linux /opt/perl-5.22.2/lib/site_perl/5.22.2 /opt/perl-5.22.2/lib/5.22.2/x86_64-linux /opt/perl-5.22.2/lib/5.22.2 .) at /home/cpansand/.cpan/build/2019020820/BioPerl-Run-1.007003-3/blib/lib/Bio/Tools/Run/Phylo/Phylip/Base.pm line 92.
# BEGIN failed--compilation aborted at /home/cpansand/.cpan/build/2019020820/BioPerl-Run-1.007003-3/blib/lib/Bio/Tools/Run/Phylo/Phylip/Base.pm line 92.
# Compilation failed in require at /home/cpansand/.cpan/build/2019020820/BioPerl-Run-1.007003-3/blib/lib/Bio/Tools/Run/Phylo/Phylip/DrawTree.pm line 95.
# BEGIN failed--compilation aborted at /home/cpansand/.cpan/build/2019020820/BioPerl-Run-1.007003-3/blib/lib/Bio/Tools/Run/Phylo/Phylip/DrawTree.pm line 95.
# Compilation failed in require at t/DrawTree.t line 10.
# BEGIN failed--compilation aborted at t/DrawTree.t line 10.
Can't locate object method "new" via package "Bio::Tools::Run::Phylo::Phylip::DrawTree" at t/DrawTree.t line 17.
# Looks like your test exited with 255 just after 2.
t/DrawTree.t ..................
Dubious, test returned 255 (wstat 65280, 0xff00)
Failed 5/6 subtests
# Failed test 'use Bio::Factory::EMBOSS;'
# at t/EMBOSS.t line 18.
# Tried to use 'Bio::Factory::EMBOSS'.
# Error: Base class package "Bio::Tools::Run::WrapperBase" is empty.
# (Perhaps you need to 'use' the module which defines that package first,
# or make that module available in @INC (@INC contains: /home/cpansand/.cpan/build/2019020820/BioPerl-Run-1.007003-3/blib/lib /home/cpansand/.cpan/build/2019020820/BioPerl-Run-1.007003-3/blib/arch /home/cpansand/.cpan/build/2019020820/BioPerl-Run-1.007003-3/_build/lib /opt/perl-5.22.2/lib/site_perl/5.22.2/x86_64-linux /opt/perl-5.22.2/lib/site_perl/5.22.2 /opt/perl-5.22.2/lib/5.22.2/x86_64-linux /opt/perl-5.22.2/lib/5.22.2 .).
# at /home/cpansand/.cpan/build/2019020820/BioPerl-Run-1.007003-3/blib/lib/Bio/Tools/Run/EMBOSSApplication.pm line 106.
# BEGIN failed--compilation aborted at /home/cpansand/.cpan/build/2019020820/BioPerl-Run-1.007003-3/blib/lib/Bio/Tools/Run/EMBOSSApplication.pm line 106.
# Compilation failed in require at /home/cpansand/.cpan/build/2019020820/BioPerl-Run-1.007003-3/blib/lib/Bio/Factory/EMBOSS.pm line 106.
# BEGIN failed--compilation aborted at /home/cpansand/.cpan/build/2019020820/BioPerl-Run-1.007003-3/blib/lib/Bio/Factory/EMBOSS.pm line 106.
# Compilation failed in require at t/EMBOSS.t line 18.
# BEGIN failed--compilation aborted at t/EMBOSS.t line 18.
Can't locate object method "new" via package "Bio::Factory::EMBOSS" at t/EMBOSS.t line 32.
# Looks like your test exited with 25 just after 4.
t/EMBOSS.t ....................
Dubious, test returned 25 (wstat 6400, 0x1900)
Failed 28/31 subtests
t/Ensembl.t ................... skipped: Network tests have not been requested
# Failed test 'use Bio::Tools::Run::Eponine;'
# at t/Eponine.t line 9.
# Tried to use 'Bio::Tools::Run::Eponine'.
# Error: Can't locate Bio/Tools/Run/WrapperBase.pm in @INC (you may need to install the Bio::Tools::Run::WrapperBase module) (@INC contains: /home/cpansand/.cpan/build/2019020820/BioPerl-Run-1.007003-3/blib/lib /home/cpansand/.cpan/build/2019020820/BioPerl-Run-1.007003-3/blib/arch /home/cpansand/.cpan/build/2019020820/BioPerl-Run-1.007003-3/_build/lib /opt/perl-5.22.2/lib/site_perl/5.22.2/x86_64-linux /opt/perl-5.22.2/lib/site_perl/5.22.2 /opt/perl-5.22.2/lib/5.22.2/x86_64-linux /opt/perl-5.22.2/lib/5.22.2 .) at /home/cpansand/.cpan/build/2019020820/BioPerl-Run-1.007003-3/blib/lib/Bio/Tools/Run/Eponine.pm line 106.
# BEGIN failed--compilation aborted at /home/cpansand/.cpan/build/2019020820/BioPerl-Run-1.007003-3/blib/lib/Bio/Tools/Run/Eponine.pm line 106.
# Compilation failed in require at t/Eponine.t line 9.
# BEGIN failed--compilation aborted at t/Eponine.t line 9.
# You need at least version 1.2 of JDK to run eponine
# Looks like you failed 1 test of 7.
t/Eponine.t ...................
Dubious, test returned 1 (wstat 256, 0x100)
Failed 1/7 subtests
(less 5 skipped subtests: 1 okay)
# Failed test 'use Bio::Tools::Run::Alignment::Exonerate;'
# at t/Exonerate.t line 9.
# Tried to use 'Bio::Tools::Run::Alignment::Exonerate'.
# Error: Can't locate Bio/Tools/Run/WrapperBase.pm in @INC (you may need to install the Bio::Tools::Run::WrapperBase module) (@INC contains: /home/cpansand/.cpan/build/2019020820/BioPerl-Run-1.007003-3/blib/lib /home/cpansand/.cpan/build/2019020820/BioPerl-Run-1.007003-3/blib/arch /home/cpansand/.cpan/build/2019020820/BioPerl-Run-1.007003-3/_build/lib /opt/perl-5.22.2/lib/site_perl/5.22.2/x86_64-linux /opt/perl-5.22.2/lib/site_perl/5.22.2 /opt/perl-5.22.2/lib/5.22.2/x86_64-linux /opt/perl-5.22.2/lib/5.22.2 .) at /home/cpansand/.cpan/build/2019020820/BioPerl-Run-1.007003-3/blib/lib/Bio/Tools/Run/Alignment/Exonerate.pm line 102.
# BEGIN failed--compilation aborted at /home/cpansand/.cpan/build/2019020820/BioPerl-Run-1.007003-3/blib/lib/Bio/Tools/Run/Alignment/Exonerate.pm line 102.
# Compilation failed in require at t/Exonerate.t line 9.
# BEGIN failed--compilation aborted at t/Exonerate.t line 9.
Can't locate object method "new" via package "Bio::Tools::Run::Alignment::Exonerate" at t/Exonerate.t line 18.
# Looks like your test exited with 255 just after 1.
t/Exonerate.t .................
Dubious, test returned 255 (wstat 65280, 0xff00)
Failed 89/89 subtests
# Failed test 'use Bio::Tools::Run::Phylo::FastTree;'
# at t/FastTree.t line 14.
# Tried to use 'Bio::Tools::Run::Phylo::FastTree'.
# Error: Base class package "Bio::Tools::Run::WrapperBase" is empty.
# (Perhaps you need to 'use' the module which defines that package first,
# or make that module available in @INC (@INC contains: /home/cpansand/.cpan/build/2019020820/BioPerl-Run-1.007003-3/blib/lib /home/cpansand/.cpan/build/2019020820/BioPerl-Run-1.007003-3/blib/arch /home/cpansand/.cpan/build/2019020820/BioPerl-Run-1.007003-3/_build/lib /opt/perl-5.22.2/lib/site_perl/5.22.2/x86_64-linux /opt/perl-5.22.2/lib/site_perl/5.22.2 /opt/perl-5.22.2/lib/5.22.2/x86_64-linux /opt/perl-5.22.2/lib/5.22.2 .).
# at /home/cpansand/.cpan/build/2019020820/BioPerl-Run-1.007003-3/blib/lib/Bio/Tools/Run/Phylo/FastTree.pm line 83.
# BEGIN failed--compilation aborted at /home/cpansand/.cpan/build/2019020820/BioPerl-Run-1.007003-3/blib/lib/Bio/Tools/Run/Phylo/FastTree.pm line 83.
# Compilation failed in require at t/FastTree.t line 14.
# BEGIN failed--compilation aborted at t/FastTree.t line 14.
Can't locate object method "new" via package "Bio::Tools::Run::Phylo::FastTree" at t/FastTree.t line 18.
# Looks like your test exited with 255 just after 3.
t/FastTree.t ..................
Dubious, test returned 255 (wstat 65280, 0xff00)
Failed 7/9 subtests
# Failed test 'use Bio::Tools::Run::FootPrinter;'
# at t/FootPrinter.t line 9.
# Tried to use 'Bio::Tools::Run::FootPrinter'.
# Error: Can't locate Bio/Tools/Run/WrapperBase.pm in @INC (you may need to install the Bio::Tools::Run::WrapperBase module) (@INC contains: /home/cpansand/.cpan/build/2019020820/BioPerl-Run-1.007003-3/blib/lib /home/cpansand/.cpan/build/2019020820/BioPerl-Run-1.007003-3/blib/arch /home/cpansand/.cpan/build/2019020820/BioPerl-Run-1.007003-3/_build/lib /opt/perl-5.22.2/lib/site_perl/5.22.2/x86_64-linux /opt/perl-5.22.2/lib/site_perl/5.22.2 /opt/perl-5.22.2/lib/5.22.2/x86_64-linux /opt/perl-5.22.2/lib/5.22.2 .) at /home/cpansand/.cpan/build/2019020820/BioPerl-Run-1.007003-3/blib/lib/Bio/Tools/Run/FootPrinter.pm line 173.
# BEGIN failed--compilation aborted at /home/cpansand/.cpan/build/2019020820/BioPerl-Run-1.007003-3/blib/lib/Bio/Tools/Run/FootPrinter.pm line 173.
# Compilation failed in require at t/FootPrinter.t line 9.
# BEGIN failed--compilation aborted at t/FootPrinter.t line 9.
Can't locate object method "new" via package "Bio::Tools::Run::FootPrinter" at t/FootPrinter.t line 29.
# Looks like your test exited with 255 just after 2.
t/FootPrinter.t ...............
Dubious, test returned 255 (wstat 65280, 0xff00)
Failed 23/24 subtests
# Failed test 'use Bio::Tools::Run::Genemark;'
# at t/Genemark.hmm.prokaryotic.t line 11.
# Tried to use 'Bio::Tools::Run::Genemark'.
# Error: Can't locate Bio/Tools/Run/WrapperBase.pm in @INC (you may need to install the Bio::Tools::Run::WrapperBase module) (@INC contains: /home/cpansand/.cpan/build/2019020820/BioPerl-Run-1.007003-3/blib/lib /home/cpansand/.cpan/build/2019020820/BioPerl-Run-1.007003-3/blib/arch /home/cpansand/.cpan/build/2019020820/BioPerl-Run-1.007003-3/_build/lib /opt/perl-5.22.2/lib/site_perl/5.22.2/x86_64-linux /opt/perl-5.22.2/lib/site_perl/5.22.2 /opt/perl-5.22.2/lib/5.22.2/x86_64-linux /opt/perl-5.22.2/lib/5.22.2 .) at /home/cpansand/.cpan/build/2019020820/BioPerl-Run-1.007003-3/blib/lib/Bio/Tools/Run/Genemark.pm line 96.
# BEGIN failed--compilation aborted at /home/cpansand/.cpan/build/2019020820/BioPerl-Run-1.007003-3/blib/lib/Bio/Tools/Run/Genemark.pm line 96.
# Compilation failed in require at t/Genemark.hmm.prokaryotic.t line 11.
# BEGIN failed--compilation aborted at t/Genemark.hmm.prokaryotic.t line 11.
# Required environment variable $GENEMARK_MODELS is not set
# Looks like you failed 1 test of 99.
t/Genemark.hmm.prokaryotic.t ..
Dubious, test returned 1 (wstat 256, 0x100)
Failed 1/99 subtests
(less 96 skipped subtests: 2 okay)
# Failed test 'use Bio::Tools::Run::Genewise;'
# at t/Genewise.t line 9.
# Tried to use 'Bio::Tools::Run::Genewise'.
# Error: Can't locate Bio/Tools/Run/WrapperBase.pm in @INC (you may need to install the Bio::Tools::Run::WrapperBase module) (@INC contains: /home/cpansand/.cpan/build/2019020820/BioPerl-Run-1.007003-3/blib/lib /home/cpansand/.cpan/build/2019020820/BioPerl-Run-1.007003-3/blib/arch /home/cpansand/.cpan/build/2019020820/BioPerl-Run-1.007003-3/_build/lib /opt/perl-5.22.2/lib/site_perl/5.22.2/x86_64-linux /opt/perl-5.22.2/lib/site_perl/5.22.2 /opt/perl-5.22.2/lib/5.22.2/x86_64-linux /opt/perl-5.22.2/lib/5.22.2 .) at /home/cpansand/.cpan/build/2019020820/BioPerl-Run-1.007003-3/blib/lib/Bio/Tools/Run/Genewise.pm line 108.
# BEGIN failed--compilation aborted at /home/cpansand/.cpan/build/2019020820/BioPerl-Run-1.007003-3/blib/lib/Bio/Tools/Run/Genewise.pm line 108.
# Compilation failed in require at t/Genewise.t line 9.
# BEGIN failed--compilation aborted at t/Genewise.t line 9.
Can't locate object method "new" via package "Bio::Tools::Run::Genewise" at t/Genewise.t line 19.
# Looks like your test exited with 255 just after 3.
t/Genewise.t ..................
Dubious, test returned 255 (wstat 65280, 0xff00)
Failed 18/20 subtests
# Failed test 'use Bio::Tools::Run::Genscan;'
# at t/Genscan.t line 9.
# Tried to use 'Bio::Tools::Run::Genscan'.
# Error: Can't locate Bio/Tools/Run/WrapperBase.pm in @INC (you may need to install the Bio::Tools::Run::WrapperBase module) (@INC contains: /home/cpansand/.cpan/build/2019020820/BioPerl-Run-1.007003-3/blib/lib /home/cpansand/.cpan/build/2019020820/BioPerl-Run-1.007003-3/blib/arch /home/cpansand/.cpan/build/2019020820/BioPerl-Run-1.007003-3/_build/lib /opt/perl-5.22.2/lib/site_perl/5.22.2/x86_64-linux /opt/perl-5.22.2/lib/site_perl/5.22.2 /opt/perl-5.22.2/lib/5.22.2/x86_64-linux /opt/perl-5.22.2/lib/5.22.2 .) at /home/cpansand/.cpan/build/2019020820/BioPerl-Run-1.007003-3/blib/lib/Bio/Tools/Run/Genscan.pm line 87.
# BEGIN failed--compilation aborted at /home/cpansand/.cpan/build/2019020820/BioPerl-Run-1.007003-3/blib/lib/Bio/Tools/Run/Genscan.pm line 87.
# Compilation failed in require at t/Genscan.t line 9.
# BEGIN failed--compilation aborted at t/Genscan.t line 9.
# Required environment variable $GENSCANDIR is not set
# Looks like you failed 1 test of 6.
t/Genscan.t ...................
Dubious, test returned 1 (wstat 256, 0x100)
Failed 1/6 subtests
(less 4 skipped subtests: 1 okay)
# Failed test 'use Bio::Tools::Run::Phylo::Gerp;'
# at t/Gerp.t line 11.
# Tried to use 'Bio::Tools::Run::Phylo::Gerp'.
# Error: Base class package "Bio::Tools::Run::Phylo::PhyloBase" is empty.
# (Perhaps you need to 'use' the module which defines that package first,
# or make that module available in @INC (@INC contains: /home/cpansand/.cpan/build/2019020820/BioPerl-Run-1.007003-3/blib/lib /home/cpansand/.cpan/build/2019020820/BioPerl-Run-1.007003-3/blib/arch /home/cpansand/.cpan/build/2019020820/BioPerl-Run-1.007003-3/_build/lib /opt/perl-5.22.2/lib/site_perl/5.22.2/x86_64-linux /opt/perl-5.22.2/lib/site_perl/5.22.2 /opt/perl-5.22.2/lib/5.22.2/x86_64-linux /opt/perl-5.22.2/lib/5.22.2 .).
# at /home/cpansand/.cpan/build/2019020820/BioPerl-Run-1.007003-3/blib/lib/Bio/Tools/Run/Phylo/Gerp.pm line 128.
# BEGIN failed--compilation aborted at /home/cpansand/.cpan/build/2019020820/BioPerl-Run-1.007003-3/blib/lib/Bio/Tools/Run/Phylo/Gerp.pm line 128.
# Compilation failed in require at t/Gerp.t line 11.
# BEGIN failed--compilation aborted at t/Gerp.t line 11.
Can't locate object method "new" via package "Bio::Tools::Run::Phylo::Gerp" at t/Gerp.t line 27.
# Looks like your test exited with 255 just after 6.
t/Gerp.t ......................
Dubious, test returned 255 (wstat 65280, 0xff00)
Failed 28/33 subtests
# Failed test 'use Bio::Tools::Run::Glimmer;'
# at t/Glimmer2.t line 12.
# Tried to use 'Bio::Tools::Run::Glimmer'.
# Error: Can't locate Bio/Tools/Run/WrapperBase.pm in @INC (you may need to install the Bio::Tools::Run::WrapperBase module) (@INC contains: /home/cpansand/.cpan/build/2019020820/BioPerl-Run-1.007003-3/blib/lib /home/cpansand/.cpan/build/2019020820/BioPerl-Run-1.007003-3/blib/arch /home/cpansand/.cpan/build/2019020820/BioPerl-Run-1.007003-3/_build/lib /opt/perl-5.22.2/lib/site_perl/5.22.2/x86_64-linux /opt/perl-5.22.2/lib/site_perl/5.22.2 /opt/perl-5.22.2/lib/5.22.2/x86_64-linux /opt/perl-5.22.2/lib/5.22.2 .) at /home/cpansand/.cpan/build/2019020820/BioPerl-Run-1.007003-3/blib/lib/Bio/Tools/Run/Glimmer.pm line 114.
# BEGIN failed--compilation aborted at /home/cpansand/.cpan/build/2019020820/BioPerl-Run-1.007003-3/blib/lib/Bio/Tools/Run/Glimmer.pm line 114.
# Compilation failed in require at t/Glimmer2.t line 12.
# BEGIN failed--compilation aborted at t/Glimmer2.t line 12.
Can't locate object method "new" via package "Bio::Tools::Run::Glimmer" at t/Glimmer2.t line 20.
# Looks like your test exited with 255 just after 3.
t/Glimmer2.t ..................
Dubious, test returned 255 (wstat 65280, 0xff00)
Failed 215/217 subtests
# Failed test 'use Bio::Tools::Run::Glimmer;'
# at t/Glimmer3.t line 12.
# Tried to use 'Bio::Tools::Run::Glimmer'.
# Error: Can't locate Bio/Tools/Run/WrapperBase.pm in @INC (you may need to install the Bio::Tools::Run::WrapperBase module) (@INC contains: /home/cpansand/.cpan/build/2019020820/BioPerl-Run-1.007003-3/blib/lib /home/cpansand/.cpan/build/2019020820/BioPerl-Run-1.007003-3/blib/arch /home/cpansand/.cpan/build/2019020820/BioPerl-Run-1.007003-3/_build/lib /opt/perl-5.22.2/lib/site_perl/5.22.2/x86_64-linux /opt/perl-5.22.2/lib/site_perl/5.22.2 /opt/perl-5.22.2/lib/5.22.2/x86_64-linux /opt/perl-5.22.2/lib/5.22.2 .) at /home/cpansand/.cpan/build/2019020820/BioPerl-Run-1.007003-3/blib/lib/Bio/Tools/Run/Glimmer.pm line 114.
# BEGIN failed--compilation aborted at /home/cpansand/.cpan/build/2019020820/BioPerl-Run-1.007003-3/blib/lib/Bio/Tools/Run/Glimmer.pm line 114.
# Compilation failed in require at t/Glimmer3.t line 12.
# BEGIN failed--compilation aborted at t/Glimmer3.t line 12.
Can't locate object method "new" via package "Bio::Tools::Run::Glimmer" at t/Glimmer3.t line 20.
# Looks like your test exited with 255 just after 3.
t/Glimmer3.t ..................
Dubious, test returned 255 (wstat 65280, 0xff00)
Failed 109/111 subtests
# Failed test 'use Bio::Tools::Run::Hmmer;'
# at t/Hmmer.t line 11.
# Tried to use 'Bio::Tools::Run::Hmmer'.
# Error: Base class package "Bio::Tools::Run::WrapperBase" is empty.
# (Perhaps you need to 'use' the module which defines that package first,
# or make that module available in @INC (@INC contains: /home/cpansand/.cpan/build/2019020820/BioPerl-Run-1.007003-3/blib/lib /home/cpansand/.cpan/build/2019020820/BioPerl-Run-1.007003-3/blib/arch /home/cpansand/.cpan/build/2019020820/BioPerl-Run-1.007003-3/_build/lib /opt/perl-5.22.2/lib/site_perl/5.22.2/x86_64-linux /opt/perl-5.22.2/lib/site_perl/5.22.2 /opt/perl-5.22.2/lib/5.22.2/x86_64-linux /opt/perl-5.22.2/lib/5.22.2 .).
# at /home/cpansand/.cpan/build/2019020820/BioPerl-Run-1.007003-3/blib/lib/Bio/Tools/Run/Hmmer.pm line 121.
# BEGIN failed--compilation aborted at /home/cpansand/.cpan/build/2019020820/BioPerl-Run-1.007003-3/blib/lib/Bio/Tools/Run/Hmmer.pm line 121.
# Compilation failed in require at t/Hmmer.t line 11.
# BEGIN failed--compilation aborted at t/Hmmer.t line 11.
Can't locate object method "new" via package "Bio::Tools::Run::Hmmer" at t/Hmmer.t line 23.
# Looks like your test exited with 255 just after 3.
t/Hmmer.t .....................
Dubious, test returned 255 (wstat 65280, 0xff00)
Failed 25/27 subtests
# Failed test 'use Bio::Tools::Run::Phylo::Hyphy::SLAC;'
# at t/Hyphy.t line 13.
# Tried to use 'Bio::Tools::Run::Phylo::Hyphy::SLAC'.
# Error: Can't locate Bio/Tools/Run/WrapperBase.pm in @INC (you may need to install the Bio::Tools::Run::WrapperBase module) (@INC contains: /home/cpansand/.cpan/build/2019020820/BioPerl-Run-1.007003-3/blib/lib /home/cpansand/.cpan/build/2019020820/BioPerl-Run-1.007003-3/blib/arch /home/cpansand/.cpan/build/2019020820/BioPerl-Run-1.007003-3/_build/lib /opt/perl-5.22.2/lib/site_perl/5.22.2/x86_64-linux /opt/perl-5.22.2/lib/site_perl/5.22.2 /opt/perl-5.22.2/lib/5.22.2/x86_64-linux /opt/perl-5.22.2/lib/5.22.2 .) at /home/cpansand/.cpan/build/2019020820/BioPerl-Run-1.007003-3/blib/lib/Bio/Tools/Run/Phylo/Hyphy/Base.pm line 82.
# BEGIN failed--compilation aborted at /home/cpansand/.cpan/build/2019020820/BioPerl-Run-1.007003-3/blib/lib/Bio/Tools/Run/Phylo/Hyphy/Base.pm line 82.
# Compilation failed in require at /home/cpansand/.cpan/build/2019020820/BioPerl-Run-1.007003-3/blib/lib/Bio/Tools/Run/Phylo/Hyphy/SLAC.pm line 100.
# BEGIN failed--compilation aborted at /home/cpansand/.cpan/build/2019020820/BioPerl-Run-1.007003-3/blib/lib/Bio/Tools/Run/Phylo/Hyphy/SLAC.pm line 100.
# Compilation failed in require at t/Hyphy.t line 13.
# BEGIN failed--compilation aborted at t/Hyphy.t line 13.
# Failed test 'use Bio::Tools::Run::Phylo::Hyphy::FEL;'
# at t/Hyphy.t line 14.
# Tried to use 'Bio::Tools::Run::Phylo::Hyphy::FEL'.
# Error: Attempt to reload Bio/Tools/Run/Phylo/Hyphy/Base.pm aborted.
# Compilation failed in require at /home/cpansand/.cpan/build/2019020820/BioPerl-Run-1.007003-3/blib/lib/Bio/Tools/Run/Phylo/Hyphy/FEL.pm line 102.
# BEGIN failed--compilation aborted at /home/cpansand/.cpan/build/2019020820/BioPerl-Run-1.007003-3/blib/lib/Bio/Tools/Run/Phylo/Hyphy/FEL.pm line 102.
# Compilation failed in require at t/Hyphy.t line 14.
# BEGIN failed--compilation aborted at t/Hyphy.t line 14.
# Failed test 'use Bio::Tools::Run::Phylo::Hyphy::REL;'
# at t/Hyphy.t line 15.
# Tried to use 'Bio::Tools::Run::Phylo::Hyphy::REL'.
# Error: Attempt to reload Bio/Tools/Run/Phylo/Hyphy/Base.pm aborted.
# Compilation failed in require at /home/cpansand/.cpan/build/2019020820/BioPerl-Run-1.007003-3/blib/lib/Bio/Tools/Run/Phylo/Hyphy/REL.pm line 102.
# BEGIN failed--compilation aborted at /home/cpansand/.cpan/build/2019020820/BioPerl-Run-1.007003-3/blib/lib/Bio/Tools/Run/Phylo/Hyphy/REL.pm line 102.
# Compilation failed in require at t/Hyphy.t line 15.
# BEGIN failed--compilation aborted at t/Hyphy.t line 15.
# Failed test 'use Bio::Tools::Run::Phylo::Hyphy::Modeltest;'
# at t/Hyphy.t line 16.
# Tried to use 'Bio::Tools::Run::Phylo::Hyphy::Modeltest'.
# Error: Attempt to reload Bio/Tools/Run/Phylo/Hyphy/Base.pm aborted.
# Compilation failed in require at /home/cpansand/.cpan/build/2019020820/BioPerl-Run-1.007003-3/blib/lib/Bio/Tools/Run/Phylo/Hyphy/Modeltest.pm line 102.
# BEGIN failed--compilation aborted at /home/cpansand/.cpan/build/2019020820/BioPerl-Run-1.007003-3/blib/lib/Bio/Tools/Run/Phylo/Hyphy/Modeltest.pm line 102.
# Compilation failed in require at t/Hyphy.t line 16.
# BEGIN failed--compilation aborted at t/Hyphy.t line 16.
# Failed test 'use Bio::Tools::Run::Phylo::Hyphy::BatchFile;'
# at t/Hyphy.t line 17.
# Tried to use 'Bio::Tools::Run::Phylo::Hyphy::BatchFile'.
# Error: Attempt to reload Bio/Tools/Run/Phylo/Hyphy/Base.pm aborted.
# Compilation failed in require at /home/cpansand/.cpan/build/2019020820/BioPerl-Run-1.007003-3/blib/lib/Bio/Tools/Run/Phylo/Hyphy/BatchFile.pm line 70.
# BEGIN failed--compilation aborted at /home/cpansand/.cpan/build/2019020820/BioPerl-Run-1.007003-3/blib/lib/Bio/Tools/Run/Phylo/Hyphy/BatchFile.pm line 70.
# Compilation failed in require at t/Hyphy.t line 17.
# BEGIN failed--compilation aborted at t/Hyphy.t line 17.
Can't locate object method "new" via package "Bio::Tools::Run::Phylo::Hyphy::REL" at t/Hyphy.t line 22.
# Looks like your test exited with 255 just after 5.
t/Hyphy.t .....................
Dubious, test returned 255 (wstat 65280, 0xff00)
Failed 10/10 subtests
# Failed test 'use Bio::Tools::Run::Infernal;'
# at t/Infernal.t line 43.
# Tried to use 'Bio::Tools::Run::Infernal'.
# Error: Base class package "Bio::Tools::Run::WrapperBase" is empty.
# (Perhaps you need to 'use' the module which defines that package first,
# or make that module available in @INC (@INC contains: /home/cpansand/.cpan/build/2019020820/BioPerl-Run-1.007003-3/blib/lib /home/cpansand/.cpan/build/2019020820/BioPerl-Run-1.007003-3/blib/arch /home/cpansand/.cpan/build/2019020820/BioPerl-Run-1.007003-3/_build/lib /opt/perl-5.22.2/lib/site_perl/5.22.2/x86_64-linux /opt/perl-5.22.2/lib/site_perl/5.22.2 /opt/perl-5.22.2/lib/5.22.2/x86_64-linux /opt/perl-5.22.2/lib/5.22.2 .).
# at /home/cpansand/.cpan/build/2019020820/BioPerl-Run-1.007003-3/blib/lib/Bio/Tools/Run/Infernal.pm line 145.
# BEGIN failed--compilation aborted at /home/cpansand/.cpan/build/2019020820/BioPerl-Run-1.007003-3/blib/lib/Bio/Tools/Run/Infernal.pm line 145.
# Compilation failed in require at t/Infernal.t line 43.
# BEGIN failed--compilation aborted at t/Infernal.t line 43.
Can't locate object method "new" via package "Bio::Tools::Run::Infernal" at t/Infernal.t line 48.
# Looks like your test exited with 255 just after 3.
t/Infernal.t ..................
Dubious, test returned 255 (wstat 65280, 0xff00)
Failed 41/43 subtests
# Failed test 'use Bio::Tools::Run::Alignment::Kalign;'
# at t/Kalign.t line 8.
# Tried to use 'Bio::Tools::Run::Alignment::Kalign'.
# Error: Can't locate Bio/Tools/Run/WrapperBase.pm in @INC (you may need to install the Bio::Tools::Run::WrapperBase module) (@INC contains: /home/cpansand/.cpan/build/2019020820/BioPerl-Run-1.007003-3/blib/lib /home/cpansand/.cpan/build/2019020820/BioPerl-Run-1.007003-3/blib/arch /home/cpansand/.cpan/build/2019020820/BioPerl-Run-1.007003-3/_build/lib /opt/perl-5.22.2/lib/site_perl/5.22.2/x86_64-linux /opt/perl-5.22.2/lib/site_perl/5.22.2 /opt/perl-5.22.2/lib/5.22.2/x86_64-linux /opt/perl-5.22.2/lib/5.22.2 .) at /home/cpansand/.cpan/build/2019020820/BioPerl-Run-1.007003-3/blib/lib/Bio/Tools/Run/Alignment/Kalign.pm line 123.
# BEGIN failed--compilation aborted at /home/cpansand/.cpan/build/2019020820/BioPerl-Run-1.007003-3/blib/lib/Bio/Tools/Run/Alignment/Kalign.pm line 123.
# Compilation failed in require at t/Kalign.t line 8.
# BEGIN failed--compilation aborted at t/Kalign.t line 8.
Can't locate object method "new" via package "Bio::Tools::Run::Alignment::Kalign" at t/Kalign.t line 16.
# Looks like your test exited with 255 just after 3.
t/Kalign.t ....................
Dubious, test returned 255 (wstat 65280, 0xff00)
Failed 6/8 subtests
# Failed test 'use Bio::Tools::Run::Phylo::LVB;'
# at t/LVB.t line 11.
# Tried to use 'Bio::Tools::Run::Phylo::LVB'.
# Error: Can't locate Bio/Tools/Run/WrapperBase.pm in @INC (you may need to install the Bio::Tools::Run::WrapperBase module) (@INC contains: /home/cpansand/.cpan/build/2019020820/BioPerl-Run-1.007003-3/blib/lib /home/cpansand/.cpan/build/2019020820/BioPerl-Run-1.007003-3/blib/arch /home/cpansand/.cpan/build/2019020820/BioPerl-Run-1.007003-3/_build/lib /opt/perl-5.22.2/lib/site_perl/5.22.2/x86_64-linux /opt/perl-5.22.2/lib/site_perl/5.22.2 /opt/perl-5.22.2/lib/5.22.2/x86_64-linux /opt/perl-5.22.2/lib/5.22.2 .) at /home/cpansand/.cpan/build/2019020820/BioPerl-Run-1.007003-3/blib/lib/Bio/Tools/Run/Phylo/LVB.pm line 164.
# BEGIN failed--compilation aborted at /home/cpansand/.cpan/build/2019020820/BioPerl-Run-1.007003-3/blib/lib/Bio/Tools/Run/Phylo/LVB.pm line 164.
# Compilation failed in require at t/LVB.t line 11.
# BEGIN failed--compilation aborted at t/LVB.t line 11.
Can't locate object method "new" via package "Bio::Tools::Run::Phylo::LVB" at t/LVB.t line 15.
# Looks like your test exited with 255 just after 2.
t/LVB.t .......................
Dubious, test returned 255 (wstat 65280, 0xff00)
Failed 18/19 subtests
# Failed test 'use Bio::Tools::Run::Alignment::Lagan;'
# at t/Lagan.t line 10.
# Tried to use 'Bio::Tools::Run::Alignment::Lagan'.
# Error: Base class package "Bio::Tools::Run::WrapperBase" is empty.
# (Perhaps you need to 'use' the module which defines that package first,
# or make that module available in @INC (@INC contains: /home/cpansand/.cpan/build/2019020820/BioPerl-Run-1.007003-3/blib/lib /home/cpansand/.cpan/build/2019020820/BioPerl-Run-1.007003-3/blib/arch /home/cpansand/.cpan/build/2019020820/BioPerl-Run-1.007003-3/_build/lib /opt/perl-5.22.2/lib/site_perl/5.22.2/x86_64-linux /opt/perl-5.22.2/lib/site_perl/5.22.2 /opt/perl-5.22.2/lib/5.22.2/x86_64-linux /opt/perl-5.22.2/lib/5.22.2 .).
# at /home/cpansand/.cpan/build/2019020820/BioPerl-Run-1.007003-3/blib/lib/Bio/Tools/Run/Alignment/Lagan.pm line 149.
# BEGIN failed--compilation aborted at /home/cpansand/.cpan/build/2019020820/BioPerl-Run-1.007003-3/blib/lib/Bio/Tools/Run/Alignment/Lagan.pm line 149.
# Compilation failed in require at t/Lagan.t line 10.
# BEGIN failed--compilation aborted at t/Lagan.t line 10.
Can't locate object method "new" via package "Bio::Tools::Run::Alignment::Lagan" at t/Lagan.t line 37, <GEN0> line 1.
# Looks like your test exited with 255 just after 6.
t/Lagan.t .....................
Dubious, test returned 255 (wstat 65280, 0xff00)
Failed 7/12 subtests
# Failed test 'use Bio::Tools::Run::Alignment::MAFFT;'
# at t/MAFFT.t line 11.
# Tried to use ' Bio::Tools::Run::Alignment::MAFFT'.
# Error: Base class package "Bio::Tools::Run::WrapperBase" is empty.
# (Perhaps you need to 'use' the module which defines that package first,
# or make that module available in @INC (@INC contains: /home/cpansand/.cpan/build/2019020820/BioPerl-Run-1.007003-3/blib/lib /home/cpansand/.cpan/build/2019020820/BioPerl-Run-1.007003-3/blib/arch /home/cpansand/.cpan/build/2019020820/BioPerl-Run-1.007003-3/_build/lib /opt/perl-5.22.2/lib/site_perl/5.22.2/x86_64-linux /opt/perl-5.22.2/lib/site_perl/5.22.2 /opt/perl-5.22.2/lib/5.22.2/x86_64-linux /opt/perl-5.22.2/lib/5.22.2 .).
# at /home/cpansand/.cpan/build/2019020820/BioPerl-Run-1.007003-3/blib/lib/Bio/Tools/Run/Alignment/MAFFT.pm line 96.
# BEGIN failed--compilation aborted at /home/cpansand/.cpan/build/2019020820/BioPerl-Run-1.007003-3/blib/lib/Bio/Tools/Run/Alignment/MAFFT.pm line 97.
# Compilation failed in require at t/MAFFT.t line 11.
# BEGIN failed--compilation aborted at t/MAFFT.t line 11.
Can't locate object method "new" via package "Bio::Tools::Run::Alignment::MAFFT" at t/MAFFT.t line 20.
# Looks like your test exited with 255 just after 3.
t/MAFFT.t .....................
Dubious, test returned 255 (wstat 65280, 0xff00)
Failed 21/23 subtests
t/MCS.t ....................... ok
# Failed test 'use Bio::Tools::Run::Alignment::MSAProbs;'
# at t/MSAProbs.t line 9.
# Tried to use 'Bio::Tools::Run::Alignment::MSAProbs'.
# Error: Can't locate Bio/Tools/Run/WrapperBase.pm in @INC (you may need to install the Bio::Tools::Run::WrapperBase module) (@INC contains: /home/cpansand/.cpan/build/2019020820/BioPerl-Run-1.007003-3/blib/lib /home/cpansand/.cpan/build/2019020820/BioPerl-Run-1.007003-3/blib/arch /home/cpansand/.cpan/build/2019020820/BioPerl-Run-1.007003-3/_build/lib /opt/perl-5.22.2/lib/site_perl/5.22.2/x86_64-linux /opt/perl-5.22.2/lib/site_perl/5.22.2 /opt/perl-5.22.2/lib/5.22.2/x86_64-linux /opt/perl-5.22.2/lib/5.22.2 .) at /home/cpansand/.cpan/build/2019020820/BioPerl-Run-1.007003-3/blib/lib/Bio/Tools/Run/Alignment/MSAProbs.pm line 139.
# BEGIN failed--compilation aborted at /home/cpansand/.cpan/build/2019020820/BioPerl-Run-1.007003-3/blib/lib/Bio/Tools/Run/Alignment/MSAProbs.pm line 139.
# Compilation failed in require at t/MSAProbs.t line 9.
# BEGIN failed--compilation aborted at t/MSAProbs.t line 9.
Can't locate object method "new" via package "Bio::Tools::Run::Alignment::MSAProbs" at t/MSAProbs.t line 23.
# Looks like your test exited with 255 just after 6.
t/MSAProbs.t ..................
Dubious, test returned 255 (wstat 65280, 0xff00)
Failed 14/19 subtests
t/Match.t ..................... ok
# Failed test 'use Bio::Tools::Run::Mdust;'
# at t/Mdust.t line 6.
# Tried to use 'Bio::Tools::Run::Mdust'.
# Error: Can't locate Bio/Tools/Run/WrapperBase.pm in @INC (you may need to install the Bio::Tools::Run::WrapperBase module) (@INC contains: /home/cpansand/.cpan/build/2019020820/BioPerl-Run-1.007003-3/blib/lib /home/cpansand/.cpan/build/2019020820/BioPerl-Run-1.007003-3/blib/arch /home/cpansand/.cpan/build/2019020820/BioPerl-Run-1.007003-3/_build/lib /opt/perl-5.22.2/lib/site_perl/5.22.2/x86_64-linux /opt/perl-5.22.2/lib/site_perl/5.22.2 /opt/perl-5.22.2/lib/5.22.2/x86_64-linux /opt/perl-5.22.2/lib/5.22.2 .) at /home/cpansand/.cpan/build/2019020820/BioPerl-Run-1.007003-3/blib/lib/Bio/Tools/Run/Mdust.pm line 99.
# BEGIN failed--compilation aborted at /home/cpansand/.cpan/build/2019020820/BioPerl-Run-1.007003-3/blib/lib/Bio/Tools/Run/Mdust.pm line 99.
# Compilation failed in require at t/Mdust.t line 6.
# BEGIN failed--compilation aborted at t/Mdust.t line 6.
Can't locate object method "new" via package "Bio::Tools::Run::Mdust" at t/Mdust.t line 15, <GEN0> line 164.
# Looks like your test exited with 255 just after 2.
t/Mdust.t .....................
Dubious, test returned 255 (wstat 65280, 0xff00)
Failed 4/5 subtests
# Failed test 'use Bio::Tools::Run::Phylo::Molphy::ProtML;'
# at t/Molphy.t line 20.
# Tried to use 'Bio::Tools::Run::Phylo::Molphy::ProtML'.
# Error: Can't locate Bio/Tools/Run/WrapperBase.pm in @INC (you may need to install the Bio::Tools::Run::WrapperBase module) (@INC contains: /home/cpansand/.cpan/build/2019020820/BioPerl-Run-1.007003-3/blib/lib /home/cpansand/.cpan/build/2019020820/BioPerl-Run-1.007003-3/blib/arch /home/cpansand/.cpan/build/2019020820/BioPerl-Run-1.007003-3/_build/lib /opt/perl-5.22.2/lib/site_perl/5.22.2/x86_64-linux /opt/perl-5.22.2/lib/site_perl/5.22.2 /opt/perl-5.22.2/lib/5.22.2/x86_64-linux /opt/perl-5.22.2/lib/5.22.2 .) at /home/cpansand/.cpan/build/2019020820/BioPerl-Run-1.007003-3/blib/lib/Bio/Tools/Run/Phylo/Molphy/ProtML.pm line 173.
# BEGIN failed--compilation aborted at /home/cpansand/.cpan/build/2019020820/BioPerl-Run-1.007003-3/blib/lib/Bio/Tools/Run/Phylo/Molphy/ProtML.pm line 173.
# Compilation failed in require at t/Molphy.t line 20.
# BEGIN failed--compilation aborted at t/Molphy.t line 20.
Can't locate object method "new" via package "Bio::Tools::Run::Phylo::Molphy::ProtML" at t/Molphy.t line 36.
# Looks like your test exited with 255 just after 3.
t/Molphy.t ....................
Dubious, test returned 255 (wstat 65280, 0xff00)
Failed 8/10 subtests
# Failed test 'use Bio::Tools::Run::Alignment::Muscle;'
# at t/Muscle.t line 9.
# Tried to use 'Bio::Tools::Run::Alignment::Muscle'.
# Error: Base class package "Bio::Tools::Run::WrapperBase" is empty.
# (Perhaps you need to 'use' the module which defines that package first,
# or make that module available in @INC (@INC contains: /home/cpansand/.cpan/build/2019020820/BioPerl-Run-1.007003-3/blib/lib /home/cpansand/.cpan/build/2019020820/BioPerl-Run-1.007003-3/blib/arch /home/cpansand/.cpan/build/2019020820/BioPerl-Run-1.007003-3/_build/lib /opt/perl-5.22.2/lib/site_perl/5.22.2/x86_64-linux /opt/perl-5.22.2/lib/site_perl/5.22.2 /opt/perl-5.22.2/lib/5.22.2/x86_64-linux /opt/perl-5.22.2/lib/5.22.2 .).
# at /home/cpansand/.cpan/build/2019020820/BioPerl-Run-1.007003-3/blib/lib/Bio/Tools/Run/Alignment/Muscle.pm line 115.
# BEGIN failed--compilation aborted at /home/cpansand/.cpan/build/2019020820/BioPerl-Run-1.007003-3/blib/lib/Bio/Tools/Run/Alignment/Muscle.pm line 115.
# Compilation failed in require at t/Muscle.t line 9.
# BEGIN failed--compilation aborted at t/Muscle.t line 9.
Can't locate object method "new" via package "Bio::Tools::Run::Alignment::Muscle" at t/Muscle.t line 21.
# Looks like your test exited with 255 just after 5.
t/Muscle.t ....................
Dubious, test returned 255 (wstat 65280, 0xff00)
Failed 12/16 subtests
# Failed test 'use Bio::Tools::Run::Phylo::Phylip::ProtDist;'
# at t/Neighbor.t line 10.
# Tried to use 'Bio::Tools::Run::Phylo::Phylip::ProtDist'.
# Error: Can't locate Bio/Tools/Run/WrapperBase.pm in @INC (you may need to install the Bio::Tools::Run::WrapperBase module) (@INC contains: /home/cpansand/.cpan/build/2019020820/BioPerl-Run-1.007003-3/blib/lib /home/cpansand/.cpan/build/2019020820/BioPerl-Run-1.007003-3/blib/arch /home/cpansand/.cpan/build/2019020820/BioPerl-Run-1.007003-3/_build/lib /opt/perl-5.22.2/lib/site_perl/5.22.2/x86_64-linux /opt/perl-5.22.2/lib/site_perl/5.22.2 /opt/perl-5.22.2/lib/5.22.2/x86_64-linux /opt/perl-5.22.2/lib/5.22.2 .) at /home/cpansand/.cpan/build/2019020820/BioPerl-Run-1.007003-3/blib/lib/Bio/Tools/Run/Phylo/Phylip/Base.pm line 92.
# BEGIN failed--compilation aborted at /home/cpansand/.cpan/build/2019020820/BioPerl-Run-1.007003-3/blib/lib/Bio/Tools/Run/Phylo/Phylip/Base.pm line 92.
# Compilation failed in require at /home/cpansand/.cpan/build/2019020820/BioPerl-Run-1.007003-3/blib/lib/Bio/Tools/Run/Phylo/Phylip/ProtDist.pm line 242.
# BEGIN failed--compilation aborted at /home/cpansand/.cpan/build/2019020820/BioPerl-Run-1.007003-3/blib/lib/Bio/Tools/Run/Phylo/Phylip/ProtDist.pm line 242.
# Compilation failed in require at t/Neighbor.t line 10.
# BEGIN failed--compilation aborted at t/Neighbor.t line 10.
# Failed test 'use Bio::Tools::Run::Phylo::Phylip::Neighbor;'
# at t/Neighbor.t line 11.
# Tried to use 'Bio::Tools::Run::Phylo::Phylip::Neighbor'.
# Error: Attempt to reload Bio/Tools/Run/Phylo/Phylip/Base.pm aborted.
# Compilation failed in require at /home/cpansand/.cpan/build/2019020820/BioPerl-Run-1.007003-3/blib/lib/Bio/Tools/Run/Phylo/Phylip/Neighbor.pm line 219.
# BEGIN failed--compilation aborted at /home/cpansand/.cpan/build/2019020820/BioPerl-Run-1.007003-3/blib/lib/Bio/Tools/Run/Phylo/Phylip/Neighbor.pm line 219.
# Compilation failed in require at t/Neighbor.t line 11.
# BEGIN failed--compilation aborted at t/Neighbor.t line 11.
Can't locate object method "new" via package "Bio::Tools::Run::Phylo::Phylip::Neighbor" at t/Neighbor.t line 22.
# Looks like your test exited with 255 just after 2.
t/Neighbor.t ..................
Dubious, test returned 255 (wstat 65280, 0xff00)
Failed 19/19 subtests
# Failed test 'use Bio::Tools::Run::Phylo::Njtree::Best;'
# at t/Njtree.t line 15.
# Tried to use 'Bio::Tools::Run::Phylo::Njtree::Best'.
# Error: Can't locate Bio/Tools/Run/WrapperBase.pm in @INC (you may need to install the Bio::Tools::Run::WrapperBase module) (@INC contains: /home/cpansand/.cpan/build/2019020820/BioPerl-Run-1.007003-3/blib/lib /home/cpansand/.cpan/build/2019020820/BioPerl-Run-1.007003-3/blib/arch /home/cpansand/.cpan/build/2019020820/BioPerl-Run-1.007003-3/_build/lib /opt/perl-5.22.2/lib/site_perl/5.22.2/x86_64-linux /opt/perl-5.22.2/lib/site_perl/5.22.2 /opt/perl-5.22.2/lib/5.22.2/x86_64-linux /opt/perl-5.22.2/lib/5.22.2 .) at /home/cpansand/.cpan/build/2019020820/BioPerl-Run-1.007003-3/blib/lib/Bio/Tools/Run/Phylo/Njtree/Best.pm line 118.
# BEGIN failed--compilation aborted at /home/cpansand/.cpan/build/2019020820/BioPerl-Run-1.007003-3/blib/lib/Bio/Tools/Run/Phylo/Njtree/Best.pm line 118.
# Compilation failed in require at t/Njtree.t line 15.
# BEGIN failed--compilation aborted at t/Njtree.t line 15.
Can't locate object method "new" via package "Bio::Tools::Run::Phylo::Njtree::Best" at t/Njtree.t line 20.
# Looks like your test exited with 255 just after 4.
t/Njtree.t ....................
Dubious, test returned 255 (wstat 65280, 0xff00)
Failed 3/6 subtests
# Failed test 'use Bio::Tools::Run::Alignment::Pal2Nal;'
# at t/Pal2Nal.t line 9.
# Tried to use 'Bio::Tools::Run::Alignment::Pal2Nal'.
# Error: Base class package "Bio::Tools::Run::Phylo::PhyloBase" is empty.
# (Perhaps you need to 'use' the module which defines that package first,
# or make that module available in @INC (@INC contains: /home/cpansand/.cpan/build/2019020820/BioPerl-Run-1.007003-3/blib/lib /home/cpansand/.cpan/build/2019020820/BioPerl-Run-1.007003-3/blib/arch /home/cpansand/.cpan/build/2019020820/BioPerl-Run-1.007003-3/_build/lib /opt/perl-5.22.2/lib/site_perl/5.22.2/x86_64-linux /opt/perl-5.22.2/lib/site_perl/5.22.2 /opt/perl-5.22.2/lib/5.22.2/x86_64-linux /opt/perl-5.22.2/lib/5.22.2 .).
# at /home/cpansand/.cpan/build/2019020820/BioPerl-Run-1.007003-3/blib/lib/Bio/Tools/Run/Alignment/Pal2Nal.pm line 116.
# BEGIN failed--compilation aborted at /home/cpansand/.cpan/build/2019020820/BioPerl-Run-1.007003-3/blib/lib/Bio/Tools/Run/Alignment/Pal2Nal.pm line 116.
# Compilation failed in require at t/Pal2Nal.t line 9.
# BEGIN failed--compilation aborted at t/Pal2Nal.t line 9.
Can't locate object method "new" via package "Bio::Tools::Run::Alignment::Pal2Nal" at t/Pal2Nal.t line 17.
# Looks like your test exited with 255 just after 1.
t/Pal2Nal.t ...................
Dubious, test returned 255 (wstat 65280, 0xff00)
Failed 9/9 subtests
t/PhastCons.t ................. ok
# Failed test 'use Bio::Tools::Run::Phylo::Phyml;'
# at t/Phyml.t line 9.
# Tried to use 'Bio::Tools::Run::Phylo::Phyml'.
# Error: Base class package "Bio::Tools::Run::WrapperBase" is empty.
# (Perhaps you need to 'use' the module which defines that package first,
# or make that module available in @INC (@INC contains: /home/cpansand/.cpan/build/2019020820/BioPerl-Run-1.007003-3/blib/lib /home/cpansand/.cpan/build/2019020820/BioPerl-Run-1.007003-3/blib/arch /home/cpansand/.cpan/build/2019020820/BioPerl-Run-1.007003-3/_build/lib /opt/perl-5.22.2/lib/site_perl/5.22.2/x86_64-linux /opt/perl-5.22.2/lib/site_perl/5.22.2 /opt/perl-5.22.2/lib/5.22.2/x86_64-linux /opt/perl-5.22.2/lib/5.22.2 .).
# at /home/cpansand/.cpan/build/2019020820/BioPerl-Run-1.007003-3/blib/lib/Bio/Tools/Run/Phylo/Phyml.pm line 159.
# BEGIN failed--compilation aborted at /home/cpansand/.cpan/build/2019020820/BioPerl-Run-1.007003-3/blib/lib/Bio/Tools/Run/Phylo/Phyml.pm line 159.
# Compilation failed in require at t/Phyml.t line 9.
# BEGIN failed--compilation aborted at t/Phyml.t line 9.
Can't locate object method "new" via package "Bio::Tools::Run::Phylo::Phyml" at t/Phyml.t line 17.
# Looks like your test exited with 255 just after 3.
t/Phyml.t .....................
Dubious, test returned 255 (wstat 65280, 0xff00)
Failed 44/46 subtests
# Failed test 'use Bio::Tools::Run::Primate;'
# at t/Primate.t line 11.
# Tried to use 'Bio::Tools::Run::Primate'.
# Error: Can't locate Bio/Tools/Run/WrapperBase.pm in @INC (you may need to install the Bio::Tools::Run::WrapperBase module) (@INC contains: /home/cpansand/.cpan/build/2019020820/BioPerl-Run-1.007003-3/blib/lib /home/cpansand/.cpan/build/2019020820/BioPerl-Run-1.007003-3/blib/arch /home/cpansand/.cpan/build/2019020820/BioPerl-Run-1.007003-3/_build/lib /opt/perl-5.22.2/lib/site_perl/5.22.2/x86_64-linux /opt/perl-5.22.2/lib/site_perl/5.22.2 /opt/perl-5.22.2/lib/5.22.2/x86_64-linux /opt/perl-5.22.2/lib/5.22.2 .) at /home/cpansand/.cpan/build/2019020820/BioPerl-Run-1.007003-3/blib/lib/Bio/Tools/Run/Primate.pm line 90.
# BEGIN failed--compilation aborted at /home/cpansand/.cpan/build/2019020820/BioPerl-Run-1.007003-3/blib/lib/Bio/Tools/Run/Primate.pm line 90.
# Compilation failed in require at t/Primate.t line 11.
# BEGIN failed--compilation aborted at t/Primate.t line 11.
Can't locate object method "new" via package "Bio::Tools::Run::Primate" at t/Primate.t line 21.
# Looks like your test exited with 255 just after 2.
t/Primate.t ...................
Dubious, test returned 255 (wstat 65280, 0xff00)
Failed 7/8 subtests
# Failed test 'use Bio::Tools::Run::Primer3;'
# at t/Primer3.t line 13.
# Tried to use 'Bio::Tools::Run::Primer3'.
# Error: Can't locate Bio/Tools/Run/WrapperBase.pm in @INC (you may need to install the Bio::Tools::Run::WrapperBase module) (@INC contains: /home/cpansand/.cpan/build/2019020820/BioPerl-Run-1.007003-3/blib/lib /home/cpansand/.cpan/build/2019020820/BioPerl-Run-1.007003-3/blib/arch /home/cpansand/.cpan/build/2019020820/BioPerl-Run-1.007003-3/_build/lib /opt/perl-5.22.2/lib/site_perl/5.22.2/x86_64-linux /opt/perl-5.22.2/lib/site_perl/5.22.2 /opt/perl-5.22.2/lib/5.22.2/x86_64-linux /opt/perl-5.22.2/lib/5.22.2 .) at /home/cpansand/.cpan/build/2019020820/BioPerl-Run-1.007003-3/blib/lib/Bio/Tools/Run/Primer3.pm line 156.
# BEGIN failed--compilation aborted at /home/cpansand/.cpan/build/2019020820/BioPerl-Run-1.007003-3/blib/lib/Bio/Tools/Run/Primer3.pm line 156.
# Compilation failed in require at t/Primer3.t line 13.
# BEGIN failed--compilation aborted at t/Primer3.t line 13.
Can't locate object method "new" via package "Bio::Tools::Run::Primer3" at t/Primer3.t line 21, <GEN0> line 1.
# Looks like your test exited with 255 just after 2.
t/Primer3.t ...................
Dubious, test returned 255 (wstat 65280, 0xff00)
Failed 8/9 subtests
# Failed test 'use Bio::Tools::Run::Prints;'
# at t/Prints.t line 9.
# Tried to use 'Bio::Tools::Run::Prints'.
# Error: Can't locate Bio/Tools/Run/WrapperBase.pm in @INC (you may need to install the Bio::Tools::Run::WrapperBase module) (@INC contains: /home/cpansand/.cpan/build/2019020820/BioPerl-Run-1.007003-3/blib/lib /home/cpansand/.cpan/build/2019020820/BioPerl-Run-1.007003-3/blib/arch /home/cpansand/.cpan/build/2019020820/BioPerl-Run-1.007003-3/_build/lib /opt/perl-5.22.2/lib/site_perl/5.22.2/x86_64-linux /opt/perl-5.22.2/lib/site_perl/5.22.2 /opt/perl-5.22.2/lib/5.22.2/x86_64-linux /opt/perl-5.22.2/lib/5.22.2 .) at /home/cpansand/.cpan/build/2019020820/BioPerl-Run-1.007003-3/blib/lib/Bio/Tools/Run/Prints.pm line 78.
# BEGIN failed--compilation aborted at /home/cpansand/.cpan/build/2019020820/BioPerl-Run-1.007003-3/blib/lib/Bio/Tools/Run/Prints.pm line 78.
# Compilation failed in require at t/Prints.t line 9.
# BEGIN failed--compilation aborted at t/Prints.t line 9.
Can't locate object method "new" via package "Bio::Tools::Run::Prints" at t/Prints.t line 17.
# Looks like your test exited with 255 just after 3.
t/Prints.t ....................
Dubious, test returned 255 (wstat 65280, 0xff00)
Failed 5/7 subtests
# Failed test 'use Bio::Tools::Run::Alignment::Probalign;'
# at t/Probalign.t line 10.
# Tried to use 'Bio::Tools::Run::Alignment::Probalign'.
# Error: Can't locate Bio/Tools/Run/WrapperBase.pm in @INC (you may need to install the Bio::Tools::Run::WrapperBase module) (@INC contains: /home/cpansand/.cpan/build/2019020820/BioPerl-Run-1.007003-3/blib/lib /home/cpansand/.cpan/build/2019020820/BioPerl-Run-1.007003-3/blib/arch /home/cpansand/.cpan/build/2019020820/BioPerl-Run-1.007003-3/_build/lib /opt/perl-5.22.2/lib/site_perl/5.22.2/x86_64-linux /opt/perl-5.22.2/lib/site_perl/5.22.2 /opt/perl-5.22.2/lib/5.22.2/x86_64-linux /opt/perl-5.22.2/lib/5.22.2 .) at /home/cpansand/.cpan/build/2019020820/BioPerl-Run-1.007003-3/blib/lib/Bio/Tools/Run/Alignment/Probalign.pm line 129.
# BEGIN failed--compilation aborted at /home/cpansand/.cpan/build/2019020820/BioPerl-Run-1.007003-3/blib/lib/Bio/Tools/Run/Alignment/Probalign.pm line 129.
# Compilation failed in require at t/Probalign.t line 10.
# BEGIN failed--compilation aborted at t/Probalign.t line 10.
Can't locate object method "new" via package "Bio::Tools::Run::Alignment::Probalign" at t/Probalign.t line 24.
# Looks like your test exited with 255 just after 5.
t/Probalign.t .................
Dubious, test returned 255 (wstat 65280, 0xff00)
Failed 9/13 subtests
# Failed test 'use Bio::Tools::Run::Alignment::Probcons;'
# at t/Probcons.t line 8.
# Tried to use ' Bio::Tools::Run::Alignment::Probcons'.
# Error: Can't locate Bio/Tools/Run/WrapperBase.pm in @INC (you may need to install the Bio::Tools::Run::WrapperBase module) (@INC contains: /home/cpansand/.cpan/build/2019020820/BioPerl-Run-1.007003-3/blib/lib /home/cpansand/.cpan/build/2019020820/BioPerl-Run-1.007003-3/blib/arch /home/cpansand/.cpan/build/2019020820/BioPerl-Run-1.007003-3/_build/lib /opt/perl-5.22.2/lib/site_perl/5.22.2/x86_64-linux /opt/perl-5.22.2/lib/site_perl/5.22.2 /opt/perl-5.22.2/lib/5.22.2/x86_64-linux /opt/perl-5.22.2/lib/5.22.2 .) at /home/cpansand/.cpan/build/2019020820/BioPerl-Run-1.007003-3/blib/lib/Bio/Tools/Run/Alignment/Probcons.pm line 151.
# BEGIN failed--compilation aborted at /home/cpansand/.cpan/build/2019020820/BioPerl-Run-1.007003-3/blib/lib/Bio/Tools/Run/Alignment/Probcons.pm line 151.
# Compilation failed in require at t/Probcons.t line 8.
# BEGIN failed--compilation aborted at t/Probcons.t line 8.
Can't locate object method "new" via package "Bio::Tools::Run::Alignment::Probcons" at t/Probcons.t line 16.
# Looks like your test exited with 255 just after 3.
t/Probcons.t ..................
Dubious, test returned 255 (wstat 65280, 0xff00)
Failed 9/11 subtests
# Failed test 'use Bio::Tools::Run::Profile;'
# at t/Profile.t line 9.
# Tried to use 'Bio::Tools::Run::Profile'.
# Error: Can't locate Bio/Tools/Run/WrapperBase.pm in @INC (you may need to install the Bio::Tools::Run::WrapperBase module) (@INC contains: /home/cpansand/.cpan/build/2019020820/BioPerl-Run-1.007003-3/blib/lib /home/cpansand/.cpan/build/2019020820/BioPerl-Run-1.007003-3/blib/arch /home/cpansand/.cpan/build/2019020820/BioPerl-Run-1.007003-3/_build/lib /opt/perl-5.22.2/lib/site_perl/5.22.2/x86_64-linux /opt/perl-5.22.2/lib/site_perl/5.22.2 /opt/perl-5.22.2/lib/5.22.2/x86_64-linux /opt/perl-5.22.2/lib/5.22.2 .) at /home/cpansand/.cpan/build/2019020820/BioPerl-Run-1.007003-3/blib/lib/Bio/Tools/Run/Profile.pm line 79.
# BEGIN failed--compilation aborted at /home/cpansand/.cpan/build/2019020820/BioPerl-Run-1.007003-3/blib/lib/Bio/Tools/Run/Profile.pm line 79.
# Compilation failed in require at t/Profile.t line 9.
# BEGIN failed--compilation aborted at t/Profile.t line 9.
Can't locate object method "new" via package "Bio::Tools::Run::Profile" at t/Profile.t line 17.
# Looks like your test exited with 255 just after 3.
t/Profile.t ...................
Dubious, test returned 255 (wstat 65280, 0xff00)
Failed 5/7 subtests
# Failed test 'use Bio::Tools::Run::Promoterwise;'
# at t/Promoterwise.t line 9.
# Tried to use 'Bio::Tools::Run::Promoterwise'.
# Error: Can't locate Bio/Tools/Run/WrapperBase.pm in @INC (you may need to install the Bio::Tools::Run::WrapperBase module) (@INC contains: /home/cpansand/.cpan/build/2019020820/BioPerl-Run-1.007003-3/blib/lib /home/cpansand/.cpan/build/2019020820/BioPerl-Run-1.007003-3/blib/arch /home/cpansand/.cpan/build/2019020820/BioPerl-Run-1.007003-3/_build/lib /opt/perl-5.22.2/lib/site_perl/5.22.2/x86_64-linux /opt/perl-5.22.2/lib/site_perl/5.22.2 /opt/perl-5.22.2/lib/5.22.2/x86_64-linux /opt/perl-5.22.2/lib/5.22.2 .) at /home/cpansand/.cpan/build/2019020820/BioPerl-Run-1.007003-3/blib/lib/Bio/Tools/Run/Promoterwise.pm line 101.
# BEGIN failed--compilation aborted at /home/cpansand/.cpan/build/2019020820/BioPerl-Run-1.007003-3/blib/lib/Bio/Tools/Run/Promoterwise.pm line 101.
# Compilation failed in require at t/Promoterwise.t line 9.
# BEGIN failed--compilation aborted at t/Promoterwise.t line 9.
Can't locate object method "new" via package "Bio::Tools::Run::Promoterwise" at t/Promoterwise.t line 15.
# Looks like your test exited with 255 just after 2.
t/Promoterwise.t ..............
Dubious, test returned 255 (wstat 65280, 0xff00)
Failed 8/9 subtests
# Failed test 'use Bio::Tools::Run::Phylo::Phylip::ProtDist;'
# at t/ProtDist.t line 12.
# Tried to use 'Bio::Tools::Run::Phylo::Phylip::ProtDist'.
# Error: Can't locate Bio/Tools/Run/WrapperBase.pm in @INC (you may need to install the Bio::Tools::Run::WrapperBase module) (@INC contains: /home/cpansand/.cpan/build/2019020820/BioPerl-Run-1.007003-3/blib/lib /home/cpansand/.cpan/build/2019020820/BioPerl-Run-1.007003-3/blib/arch /home/cpansand/.cpan/build/2019020820/BioPerl-Run-1.007003-3/_build/lib /opt/perl-5.22.2/lib/site_perl/5.22.2/x86_64-linux /opt/perl-5.22.2/lib/site_perl/5.22.2 /opt/perl-5.22.2/lib/5.22.2/x86_64-linux /opt/perl-5.22.2/lib/5.22.2 .) at /home/cpansand/.cpan/build/2019020820/BioPerl-Run-1.007003-3/blib/lib/Bio/Tools/Run/Phylo/Phylip/Base.pm line 92.
# BEGIN failed--compilation aborted at /home/cpansand/.cpan/build/2019020820/BioPerl-Run-1.007003-3/blib/lib/Bio/Tools/Run/Phylo/Phylip/Base.pm line 92.
# Compilation failed in require at /home/cpansand/.cpan/build/2019020820/BioPerl-Run-1.007003-3/blib/lib/Bio/Tools/Run/Phylo/Phylip/ProtDist.pm line 242.
# BEGIN failed--compilation aborted at /home/cpansand/.cpan/build/2019020820/BioPerl-Run-1.007003-3/blib/lib/Bio/Tools/Run/Phylo/Phylip/ProtDist.pm line 242.
# Compilation failed in require at t/ProtDist.t line 12.
# BEGIN failed--compilation aborted at t/ProtDist.t line 12.
Can't locate object method "new" via package "Bio::Tools::Run::Phylo::Phylip::ProtDist" at t/ProtDist.t line 25.
# Looks like your test exited with 255 just after 1.
t/ProtDist.t ..................
Dubious, test returned 255 (wstat 65280, 0xff00)
Failed 14/14 subtests
# Failed test 'use Bio::Tools::Run::Phylo::Phylip::ProtPars;'
# at t/ProtPars.t line 11.
# Tried to use 'Bio::Tools::Run::Phylo::Phylip::ProtPars'.
# Error: Can't locate Bio/Tools/Run/WrapperBase.pm in @INC (you may need to install the Bio::Tools::Run::WrapperBase module) (@INC contains: /home/cpansand/.cpan/build/2019020820/BioPerl-Run-1.007003-3/blib/lib /home/cpansand/.cpan/build/2019020820/BioPerl-Run-1.007003-3/blib/arch /home/cpansand/.cpan/build/2019020820/BioPerl-Run-1.007003-3/_build/lib /opt/perl-5.22.2/lib/site_perl/5.22.2/x86_64-linux /opt/perl-5.22.2/lib/site_perl/5.22.2 /opt/perl-5.22.2/lib/5.22.2/x86_64-linux /opt/perl-5.22.2/lib/5.22.2 .) at /home/cpansand/.cpan/build/2019020820/BioPerl-Run-1.007003-3/blib/lib/Bio/Tools/Run/Phylo/Phylip/Base.pm line 92.
# BEGIN failed--compilation aborted at /home/cpansand/.cpan/build/2019020820/BioPerl-Run-1.007003-3/blib/lib/Bio/Tools/Run/Phylo/Phylip/Base.pm line 92.
# Compilation failed in require at /home/cpansand/.cpan/build/2019020820/BioPerl-Run-1.007003-3/blib/lib/Bio/Tools/Run/Phylo/Phylip/ProtPars.pm line 158.
# BEGIN failed--compilation aborted at /home/cpansand/.cpan/build/2019020820/BioPerl-Run-1.007003-3/blib/lib/Bio/Tools/Run/Phylo/Phylip/ProtPars.pm line 158.
# Compilation failed in require at t/ProtPars.t line 11.
# BEGIN failed--compilation aborted at t/ProtPars.t line 11.
Can't locate object method "new" via package "Bio::Tools::Run::Phylo::Phylip::ProtPars" at t/ProtPars.t line 15.
# Looks like your test exited with 255 just after 1.
t/ProtPars.t ..................
Dubious, test returned 255 (wstat 65280, 0xff00)
Failed 11/11 subtests
# Failed test 'use Bio::Tools::Run::Pseudowise;'
# at t/Pseudowise.t line 9.
# Tried to use 'Bio::Tools::Run::Pseudowise'.
# Error: Can't locate Bio/Tools/Run/WrapperBase.pm in @INC (you may need to install the Bio::Tools::Run::WrapperBase module) (@INC contains: /home/cpansand/.cpan/build/2019020820/BioPerl-Run-1.007003-3/blib/lib /home/cpansand/.cpan/build/2019020820/BioPerl-Run-1.007003-3/blib/arch /home/cpansand/.cpan/build/2019020820/BioPerl-Run-1.007003-3/_build/lib /opt/perl-5.22.2/lib/site_perl/5.22.2/x86_64-linux /opt/perl-5.22.2/lib/site_perl/5.22.2 /opt/perl-5.22.2/lib/5.22.2/x86_64-linux /opt/perl-5.22.2/lib/5.22.2 .) at /home/cpansand/.cpan/build/2019020820/BioPerl-Run-1.007003-3/blib/lib/Bio/Tools/Run/Pseudowise.pm line 80.
# BEGIN failed--compilation aborted at /home/cpansand/.cpan/build/2019020820/BioPerl-Run-1.007003-3/blib/lib/Bio/Tools/Run/Pseudowise.pm line 80.
# Compilation failed in require at t/Pseudowise.t line 9.
# BEGIN failed--compilation aborted at t/Pseudowise.t line 9.
Can't locate object method "new" via package "Bio::Tools::Run::Pseudowise" at t/Pseudowise.t line 18.
# Looks like your test exited with 255 just after 3.
t/Pseudowise.t ................
Dubious, test returned 255 (wstat 65280, 0xff00)
Failed 16/18 subtests
# Failed test 'use Bio::Tools::Run::Phylo::QuickTree;'
# at t/QuickTree.t line 9.
# Tried to use 'Bio::Tools::Run::Phylo::QuickTree'.
# Error: Base class package "Bio::Tools::Run::WrapperBase" is empty.
# (Perhaps you need to 'use' the module which defines that package first,
# or make that module available in @INC (@INC contains: /home/cpansand/.cpan/build/2019020820/BioPerl-Run-1.007003-3/blib/lib /home/cpansand/.cpan/build/2019020820/BioPerl-Run-1.007003-3/blib/arch /home/cpansand/.cpan/build/2019020820/BioPerl-Run-1.007003-3/_build/lib /opt/perl-5.22.2/lib/site_perl/5.22.2/x86_64-linux /opt/perl-5.22.2/lib/site_perl/5.22.2 /opt/perl-5.22.2/lib/5.22.2/x86_64-linux /opt/perl-5.22.2/lib/5.22.2 .).
# at /home/cpansand/.cpan/build/2019020820/BioPerl-Run-1.007003-3/blib/lib/Bio/Tools/Run/Phylo/QuickTree.pm line 108.
# BEGIN failed--compilation aborted at /home/cpansand/.cpan/build/2019020820/BioPerl-Run-1.007003-3/blib/lib/Bio/Tools/Run/Phylo/QuickTree.pm line 108.
# Compilation failed in require at t/QuickTree.t line 9.
# BEGIN failed--compilation aborted at t/QuickTree.t line 9.
Can't locate object method "new" via package "Bio::Tools::Run::Phylo::QuickTree" at t/QuickTree.t line 18.
# Looks like your test exited with 255 just after 3.
t/QuickTree.t .................
Dubious, test returned 255 (wstat 65280, 0xff00)
Failed 11/13 subtests
# Failed test 'use Bio::Tools::Run::Phylo::Raxml;'
# at t/Raxml.t line 14.
# Tried to use 'Bio::Tools::Run::Phylo::Raxml'.
# Error: Base class package "Bio::Tools::Run::WrapperBase" is empty.
# (Perhaps you need to 'use' the module which defines that package first,
# or make that module available in @INC (@INC contains: /home/cpansand/.cpan/build/2019020820/BioPerl-Run-1.007003-3/blib/lib /home/cpansand/.cpan/build/2019020820/BioPerl-Run-1.007003-3/blib/arch /home/cpansand/.cpan/build/2019020820/BioPerl-Run-1.007003-3/_build/lib /opt/perl-5.22.2/lib/site_perl/5.22.2/x86_64-linux /opt/perl-5.22.2/lib/site_perl/5.22.2 /opt/perl-5.22.2/lib/5.22.2/x86_64-linux /opt/perl-5.22.2/lib/5.22.2 .).
# at /home/cpansand/.cpan/build/2019020820/BioPerl-Run-1.007003-3/blib/lib/Bio/Tools/Run/Phylo/Raxml.pm line 86.
# BEGIN failed--compilation aborted at /home/cpansand/.cpan/build/2019020820/BioPerl-Run-1.007003-3/blib/lib/Bio/Tools/Run/Phylo/Raxml.pm line 86.
# Compilation failed in require at t/Raxml.t line 14.
# BEGIN failed--compilation aborted at t/Raxml.t line 14.
Can't locate object method "new" via package "Bio::Tools::Run::Phylo::Raxml" at t/Raxml.t line 20.
# Looks like your test exited with 255 just after 3.
t/Raxml.t .....................
Dubious, test returned 255 (wstat 65280, 0xff00)
Failed 10/12 subtests
# Failed test 'use Bio::Tools::Run::RepeatMasker;'
# at t/RepeatMasker.t line 9.
# Tried to use 'Bio::Tools::Run::RepeatMasker'.
# Error: Can't locate Bio/Tools/Run/WrapperBase.pm in @INC (you may need to install the Bio::Tools::Run::WrapperBase module) (@INC contains: /home/cpansand/.cpan/build/2019020820/BioPerl-Run-1.007003-3/blib/lib /home/cpansand/.cpan/build/2019020820/BioPerl-Run-1.007003-3/blib/arch /home/cpansand/.cpan/build/2019020820/BioPerl-Run-1.007003-3/_build/lib /opt/perl-5.22.2/lib/site_perl/5.22.2/x86_64-linux /opt/perl-5.22.2/lib/site_perl/5.22.2 /opt/perl-5.22.2/lib/5.22.2/x86_64-linux /opt/perl-5.22.2/lib/5.22.2 .) at /home/cpansand/.cpan/build/2019020820/BioPerl-Run-1.007003-3/blib/lib/Bio/Tools/Run/RepeatMasker.pm line 120.
# BEGIN failed--compilation aborted at /home/cpansand/.cpan/build/2019020820/BioPerl-Run-1.007003-3/blib/lib/Bio/Tools/Run/RepeatMasker.pm line 120.
# Compilation failed in require at t/RepeatMasker.t line 9.
# BEGIN failed--compilation aborted at t/RepeatMasker.t line 9.
Can't locate object method "new" via package "Bio::Tools::Run::RepeatMasker" at t/RepeatMasker.t line 18.
# Looks like your test exited with 25 just after 2.
t/RepeatMasker.t ..............
Dubious, test returned 25 (wstat 6400, 0x1900)
Failed 11/12 subtests
# Failed test 'use Bio::Tools::Run::StandAloneBlastPlus;'
# at t/SABlastPlus.t line 13.
# Tried to use 'Bio::Tools::Run::StandAloneBlastPlus'.
# Error: Can't locate Bio/Tools/Run/WrapperBase.pm in @INC (you may need to install the Bio::Tools::Run::WrapperBase module) (@INC contains: ../../.. ../../../.. ../lib /home/cpansand/.cpan/build/2019020820/BioPerl-Run-1.007003-3/blib/lib /home/cpansand/.cpan/build/2019020820/BioPerl-Run-1.007003-3/blib/arch /home/cpansand/.cpan/build/2019020820/BioPerl-Run-1.007003-3/_build/lib /opt/perl-5.22.2/lib/site_perl/5.22.2/x86_64-linux /opt/perl-5.22.2/lib/site_perl/5.22.2 /opt/perl-5.22.2/lib/5.22.2/x86_64-linux /opt/perl-5.22.2/lib/5.22.2 .) at /home/cpansand/.cpan/build/2019020820/BioPerl-Run-1.007003-3/blib/lib/Bio/Tools/Run/BlastPlus.pm line 83.
# BEGIN failed--compilation aborted at /home/cpansand/.cpan/build/2019020820/BioPerl-Run-1.007003-3/blib/lib/Bio/Tools/Run/BlastPlus.pm line 83.
# Compilation failed in require at /home/cpansand/.cpan/build/2019020820/BioPerl-Run-1.007003-3/blib/lib/Bio/Tools/Run/StandAloneBlastPlus/BlastMethods.pm line 179.
# BEGIN failed--compilation aborted at /home/cpansand/.cpan/build/2019020820/BioPerl-Run-1.007003-3/blib/lib/Bio/Tools/Run/StandAloneBlastPlus/BlastMethods.pm line 179.
# Compilation failed in require at /home/cpansand/.cpan/build/2019020820/BioPerl-Run-1.007003-3/blib/lib/Bio/Tools/Run/StandAloneBlastPlus.pm line 427.
# BEGIN failed--compilation aborted at /home/cpansand/.cpan/build/2019020820/BioPerl-Run-1.007003-3/blib/lib/Bio/Tools/Run/StandAloneBlastPlus.pm line 427.
# Compilation failed in require at t/SABlastPlus.t line 13.
# BEGIN failed--compilation aborted at t/SABlastPlus.t line 13.
# Failed test 'use Bio::Tools::Run::WrapperBase;'
# at t/SABlastPlus.t line 14.
# Tried to use 'Bio::Tools::Run::WrapperBase'.
# Error: Can't locate Bio/Tools/Run/WrapperBase.pm in @INC (you may need to install the Bio::Tools::Run::WrapperBase module) (@INC contains: ../../.. ../../../.. ../lib /home/cpansand/.cpan/build/2019020820/BioPerl-Run-1.007003-3/blib/lib /home/cpansand/.cpan/build/2019020820/BioPerl-Run-1.007003-3/blib/arch /home/cpansand/.cpan/build/2019020820/BioPerl-Run-1.007003-3/_build/lib /opt/perl-5.22.2/lib/site_perl/5.22.2/x86_64-linux /opt/perl-5.22.2/lib/site_perl/5.22.2 /opt/perl-5.22.2/lib/5.22.2/x86_64-linux /opt/perl-5.22.2/lib/5.22.2 .) at t/SABlastPlus.t line 14.
# BEGIN failed--compilation aborted at t/SABlastPlus.t line 14.
# Failed test 'use Bio::Tools::Run::WrapperBase::CommandExts;'
# at t/SABlastPlus.t line 15.
# Tried to use 'Bio::Tools::Run::WrapperBase::CommandExts'.
# Error: Can't locate Bio/Tools/Run/WrapperBase/CommandExts.pm in @INC (you may need to install the Bio::Tools::Run::WrapperBase::CommandExts module) (@INC contains: ../../.. ../../../.. ../lib /home/cpansand/.cpan/build/2019020820/BioPerl-Run-1.007003-3/blib/lib /home/cpansand/.cpan/build/2019020820/BioPerl-Run-1.007003-3/blib/arch /home/cpansand/.cpan/build/2019020820/BioPerl-Run-1.007003-3/_build/lib /opt/perl-5.22.2/lib/site_perl/5.22.2/x86_64-linux /opt/perl-5.22.2/lib/site_perl/5.22.2 /opt/perl-5.22.2/lib/5.22.2/x86_64-linux /opt/perl-5.22.2/lib/5.22.2 .) at t/SABlastPlus.t line 15.
# BEGIN failed--compilation aborted at t/SABlastPlus.t line 15.
Can't locate object method "new" via package "Bio::Tools::Run::BlastPlus" at t/SABlastPlus.t line 21.
# Looks like your test exited with 255 just after 3.
t/SABlastPlus.t ...............
Dubious, test returned 255 (wstat 65280, 0xff00)
Failed 73/73 subtests
# Failed test 'use Bio::Tools::Run::Phylo::SLR;'
# at t/SLR.t line 16.
# Tried to use 'Bio::Tools::Run::Phylo::SLR'.
# Error: Can't locate Bio/Tools/Run/WrapperBase.pm in @INC (you may need to install the Bio::Tools::Run::WrapperBase module) (@INC contains: /home/cpansand/.cpan/build/2019020820/BioPerl-Run-1.007003-3/blib/lib /home/cpansand/.cpan/build/2019020820/BioPerl-Run-1.007003-3/blib/arch /home/cpansand/.cpan/build/2019020820/BioPerl-Run-1.007003-3/_build/lib /opt/perl-5.22.2/lib/site_perl/5.22.2/x86_64-linux /opt/perl-5.22.2/lib/site_perl/5.22.2 /opt/perl-5.22.2/lib/5.22.2/x86_64-linux /opt/perl-5.22.2/lib/5.22.2 .) at /home/cpansand/.cpan/build/2019020820/BioPerl-Run-1.007003-3/blib/lib/Bio/Tools/Run/Phylo/SLR.pm line 126.
# BEGIN failed--compilation aborted at /home/cpansand/.cpan/build/2019020820/BioPerl-Run-1.007003-3/blib/lib/Bio/Tools/Run/Phylo/SLR.pm line 126.
# Compilation failed in require at t/SLR.t line 16.
# BEGIN failed--compilation aborted at t/SLR.t line 16.
Can't locate object method "new" via package "Bio::Tools::Run::Phylo::SLR" at t/SLR.t line 21.
# Looks like your test exited with 255 just after 4.
t/SLR.t .......................
Dubious, test returned 255 (wstat 65280, 0xff00)
Failed 4/7 subtests
Can't locate Bio/Tools/Run/WrapperBase.pm in @INC (you may need to install the Bio::Tools::Run::WrapperBase module) (@INC contains: . /home/cpansand/.cpan/build/2019020820/BioPerl-Run-1.007003-3/blib/lib /home/cpansand/.cpan/build/2019020820/BioPerl-Run-1.007003-3/blib/arch /home/cpansand/.cpan/build/2019020820/BioPerl-Run-1.007003-3/_build/lib /opt/perl-5.22.2/lib/site_perl/5.22.2/x86_64-linux /opt/perl-5.22.2/lib/site_perl/5.22.2 /opt/perl-5.22.2/lib/5.22.2/x86_64-linux /opt/perl-5.22.2/lib/5.22.2 .) at t/Samtools.t line 18.
BEGIN failed--compilation aborted at t/Samtools.t line 18.
t/Samtools.t ..................
Dubious, test returned 2 (wstat 512, 0x200)
No subtests run
# Failed test 'use Bio::Tools::Run::Seg;'
# at t/Seg.t line 9.
# Tried to use 'Bio::Tools::Run::Seg'.
# Error: Can't locate Bio/Tools/Run/WrapperBase.pm in @INC (you may need to install the Bio::Tools::Run::WrapperBase module) (@INC contains: /home/cpansand/.cpan/build/2019020820/BioPerl-Run-1.007003-3/blib/lib /home/cpansand/.cpan/build/2019020820/BioPerl-Run-1.007003-3/blib/arch /home/cpansand/.cpan/build/2019020820/BioPerl-Run-1.007003-3/_build/lib /opt/perl-5.22.2/lib/site_perl/5.22.2/x86_64-linux /opt/perl-5.22.2/lib/site_perl/5.22.2 /opt/perl-5.22.2/lib/5.22.2/x86_64-linux /opt/perl-5.22.2/lib/5.22.2 .) at /home/cpansand/.cpan/build/2019020820/BioPerl-Run-1.007003-3/blib/lib/Bio/Tools/Run/Seg.pm line 77.
# BEGIN failed--compilation aborted at /home/cpansand/.cpan/build/2019020820/BioPerl-Run-1.007003-3/blib/lib/Bio/Tools/Run/Seg.pm line 77.
# Compilation failed in require at t/Seg.t line 9.
# BEGIN failed--compilation aborted at t/Seg.t line 9.
Can't locate object method "new" via package "Bio::Tools::Run::Seg" at t/Seg.t line 14.
# Looks like your test exited with 255 just after 3.
t/Seg.t .......................
Dubious, test returned 255 (wstat 65280, 0xff00)
Failed 6/8 subtests
# Failed test 'use Bio::Tools::Run::Phylo::Semphy;'
# at t/Semphy.t line 9.
# Tried to use 'Bio::Tools::Run::Phylo::Semphy'.
# Error: Base class package "Bio::Tools::Run::Phylo::PhyloBase" is empty.
# (Perhaps you need to 'use' the module which defines that package first,
# or make that module available in @INC (@INC contains: /home/cpansand/.cpan/build/2019020820/BioPerl-Run-1.007003-3/blib/lib /home/cpansand/.cpan/build/2019020820/BioPerl-Run-1.007003-3/blib/arch /home/cpansand/.cpan/build/2019020820/BioPerl-Run-1.007003-3/_build/lib /opt/perl-5.22.2/lib/site_perl/5.22.2/x86_64-linux /opt/perl-5.22.2/lib/site_perl/5.22.2 /opt/perl-5.22.2/lib/5.22.2/x86_64-linux /opt/perl-5.22.2/lib/5.22.2 .).
# at /home/cpansand/.cpan/build/2019020820/BioPerl-Run-1.007003-3/blib/lib/Bio/Tools/Run/Phylo/Semphy.pm line 125.
# BEGIN failed--compilation aborted at /home/cpansand/.cpan/build/2019020820/BioPerl-Run-1.007003-3/blib/lib/Bio/Tools/Run/Phylo/Semphy.pm line 125.
# Compilation failed in require at t/Semphy.t line 9.
# BEGIN failed--compilation aborted at t/Semphy.t line 9.
Can't locate object method "new" via package "Bio::Tools::Run::Phylo::Semphy" at t/Semphy.t line 17.
# Looks like your test exited with 255 just after 1.
t/Semphy.t ....................
Dubious, test returned 255 (wstat 65280, 0xff00)
Failed 19/19 subtests
# Failed test 'use Bio::Tools::Run::Phylo::Phylip::SeqBoot;'
# at t/SeqBoot.t line 12.
# Tried to use 'Bio::Tools::Run::Phylo::Phylip::SeqBoot'.
# Error: Can't locate Bio/Tools/Run/WrapperBase.pm in @INC (you may need to install the Bio::Tools::Run::WrapperBase module) (@INC contains: /home/cpansand/.cpan/build/2019020820/BioPerl-Run-1.007003-3/blib/lib /home/cpansand/.cpan/build/2019020820/BioPerl-Run-1.007003-3/blib/arch /home/cpansand/.cpan/build/2019020820/BioPerl-Run-1.007003-3/_build/lib /opt/perl-5.22.2/lib/site_perl/5.22.2/x86_64-linux /opt/perl-5.22.2/lib/site_perl/5.22.2 /opt/perl-5.22.2/lib/5.22.2/x86_64-linux /opt/perl-5.22.2/lib/5.22.2 .) at /home/cpansand/.cpan/build/2019020820/BioPerl-Run-1.007003-3/blib/lib/Bio/Tools/Run/Phylo/Phylip/Base.pm line 92.
# BEGIN failed--compilation aborted at /home/cpansand/.cpan/build/2019020820/BioPerl-Run-1.007003-3/blib/lib/Bio/Tools/Run/Phylo/Phylip/Base.pm line 92.
# Compilation failed in require at /home/cpansand/.cpan/build/2019020820/BioPerl-Run-1.007003-3/blib/lib/Bio/Tools/Run/Phylo/Phylip/SeqBoot.pm line 187.
# BEGIN failed--compilation aborted at /home/cpansand/.cpan/build/2019020820/BioPerl-Run-1.007003-3/blib/lib/Bio/Tools/Run/Phylo/Phylip/SeqBoot.pm line 187.
# Compilation failed in require at t/SeqBoot.t line 12.
# BEGIN failed--compilation aborted at t/SeqBoot.t line 12.
Can't locate object method "new" via package "Bio::Tools::Run::Phylo::Phylip::SeqBoot" at t/SeqBoot.t line 21.
# Looks like your test exited with 255 just after 2.
t/SeqBoot.t ...................
Dubious, test returned 255 (wstat 65280, 0xff00)
Failed 8/9 subtests
# Failed test 'use Bio::Tools::Run::Signalp;'
# at t/Signalp.t line 9.
# Tried to use 'Bio::Tools::Run::Signalp'.
# Error: Can't locate Bio/Tools/Run/WrapperBase.pm in @INC (you may need to install the Bio::Tools::Run::WrapperBase module) (@INC contains: /home/cpansand/.cpan/build/2019020820/BioPerl-Run-1.007003-3/blib/lib /home/cpansand/.cpan/build/2019020820/BioPerl-Run-1.007003-3/blib/arch /home/cpansand/.cpan/build/2019020820/BioPerl-Run-1.007003-3/_build/lib /opt/perl-5.22.2/lib/site_perl/5.22.2/x86_64-linux /opt/perl-5.22.2/lib/site_perl/5.22.2 /opt/perl-5.22.2/lib/5.22.2/x86_64-linux /opt/perl-5.22.2/lib/5.22.2 .) at /home/cpansand/.cpan/build/2019020820/BioPerl-Run-1.007003-3/blib/lib/Bio/Tools/Run/Signalp.pm line 85.
# BEGIN failed--compilation aborted at /home/cpansand/.cpan/build/2019020820/BioPerl-Run-1.007003-3/blib/lib/Bio/Tools/Run/Signalp.pm line 85.
# Compilation failed in require at t/Signalp.t line 9.
# BEGIN failed--compilation aborted at t/Signalp.t line 9.
Can't locate object method "new" via package "Bio::Tools::Run::Signalp" at t/Signalp.t line 14.
# Looks like your test exited with 255 just after 3.
t/Signalp.t ...................
Dubious, test returned 255 (wstat 65280, 0xff00)
Failed 5/7 subtests
# Failed test 'use Bio::Tools::Run::Alignment::Sim4;'
# at t/Sim4.t line 9.
# Tried to use 'Bio::Tools::Run::Alignment::Sim4'.
# Error: Can't locate Bio/Tools/Run/WrapperBase.pm in @INC (you may need to install the Bio::Tools::Run::WrapperBase module) (@INC contains: /home/cpansand/.cpan/build/2019020820/BioPerl-Run-1.007003-3/blib/lib /home/cpansand/.cpan/build/2019020820/BioPerl-Run-1.007003-3/blib/arch /home/cpansand/.cpan/build/2019020820/BioPerl-Run-1.007003-3/_build/lib /opt/perl-5.22.2/lib/site_perl/5.22.2/x86_64-linux /opt/perl-5.22.2/lib/site_perl/5.22.2 /opt/perl-5.22.2/lib/5.22.2/x86_64-linux /opt/perl-5.22.2/lib/5.22.2 .) at /home/cpansand/.cpan/build/2019020820/BioPerl-Run-1.007003-3/blib/lib/Bio/Tools/Run/Alignment/Sim4.pm line 106.
# BEGIN failed--compilation aborted at /home/cpansand/.cpan/build/2019020820/BioPerl-Run-1.007003-3/blib/lib/Bio/Tools/Run/Alignment/Sim4.pm line 106.
# Compilation failed in require at t/Sim4.t line 9.
# BEGIN failed--compilation aborted at t/Sim4.t line 9.
Can't locate object method "new" via package "Bio::Tools::Run::Alignment::Sim4" at t/Sim4.t line 20.
# Looks like your test exited with 255 just after 4.
t/Sim4.t ......................
Dubious, test returned 255 (wstat 65280, 0xff00)
Failed 20/23 subtests
# Failed test 'use Bio::Tools::Run::Simprot;'
# at t/Simprot.t line 16.
# Tried to use 'Bio::Tools::Run::Simprot'.
# Error: Can't locate Bio/Tools/Run/WrapperBase.pm in @INC (you may need to install the Bio::Tools::Run::WrapperBase module) (@INC contains: /home/cpansand/.cpan/build/2019020820/BioPerl-Run-1.007003-3/blib/lib /home/cpansand/.cpan/build/2019020820/BioPerl-Run-1.007003-3/blib/arch /home/cpansand/.cpan/build/2019020820/BioPerl-Run-1.007003-3/_build/lib /opt/perl-5.22.2/lib/site_perl/5.22.2/x86_64-linux /opt/perl-5.22.2/lib/site_perl/5.22.2 /opt/perl-5.22.2/lib/5.22.2/x86_64-linux /opt/perl-5.22.2/lib/5.22.2 .) at /home/cpansand/.cpan/build/2019020820/BioPerl-Run-1.007003-3/blib/lib/Bio/Tools/Run/Simprot.pm line 116.
# BEGIN failed--compilation aborted at /home/cpansand/.cpan/build/2019020820/BioPerl-Run-1.007003-3/blib/lib/Bio/Tools/Run/Simprot.pm line 116.
# Compilation failed in require at t/Simprot.t line 16.
# BEGIN failed--compilation aborted at t/Simprot.t line 16.
Can't locate object method "new" via package "Bio::Tools::Run::Simprot" at t/Simprot.t line 21.
# Looks like your test exited with 255 just after 4.
t/Simprot.t ...................
Dubious, test returned 255 (wstat 65280, 0xff00)
Failed 3/6 subtests
t/SoapEU-function.t ........... skipped: Valid email not provided; required for tests
# NCBI SOAP EUtilities API no longer supported as of 2015, modules are deprecated and will be removed in a future release
t/SoapEU-unit.t ............... ok
# Failed test 'use Bio::Tools::Run::Alignment::StandAloneFasta;'
# at t/StandAloneFasta.t line 10.
# Tried to use 'Bio::Tools::Run::Alignment::StandAloneFasta'.
# Error: Can't locate Bio/Tools/Run/WrapperBase.pm in @INC (you may need to install the Bio::Tools::Run::WrapperBase module) (@INC contains: /home/cpansand/.cpan/build/2019020820/BioPerl-Run-1.007003-3/blib/lib /home/cpansand/.cpan/build/2019020820/BioPerl-Run-1.007003-3/blib/arch /home/cpansand/.cpan/build/2019020820/BioPerl-Run-1.007003-3/_build/lib /opt/perl-5.22.2/lib/site_perl/5.22.2/x86_64-linux /opt/perl-5.22.2/lib/site_perl/5.22.2 /opt/perl-5.22.2/lib/5.22.2/x86_64-linux /opt/perl-5.22.2/lib/5.22.2 .) at /home/cpansand/.cpan/build/2019020820/BioPerl-Run-1.007003-3/blib/lib/Bio/Tools/Run/Alignment/StandAloneFasta.pm line 134.
# BEGIN failed--compilation aborted at /home/cpansand/.cpan/build/2019020820/BioPerl-Run-1.007003-3/blib/lib/Bio/Tools/Run/Alignment/StandAloneFasta.pm line 134.
# Compilation failed in require at t/StandAloneFasta.t line 10.
# BEGIN failed--compilation aborted at t/StandAloneFasta.t line 10.
Can't locate object method "new" via package "Bio::Tools::Run::Alignment::StandAloneFasta" at t/StandAloneFasta.t line 22.
# Looks like your test exited with 25 just after 2.
t/StandAloneFasta.t ...........
Dubious, test returned 25 (wstat 6400, 0x1900)
Failed 14/15 subtests
# Failed test 'use Bio::Tools::Run::Tmhmm;'
# at t/Tmhmm.t line 9.
# Tried to use 'Bio::Tools::Run::Tmhmm'.
# Error: Can't locate Bio/Tools/Run/WrapperBase.pm in @INC (you may need to install the Bio::Tools::Run::WrapperBase module) (@INC contains: /home/cpansand/.cpan/build/2019020820/BioPerl-Run-1.007003-3/blib/lib /home/cpansand/.cpan/build/2019020820/BioPerl-Run-1.007003-3/blib/arch /home/cpansand/.cpan/build/2019020820/BioPerl-Run-1.007003-3/_build/lib /opt/perl-5.22.2/lib/site_perl/5.22.2/x86_64-linux /opt/perl-5.22.2/lib/site_perl/5.22.2 /opt/perl-5.22.2/lib/5.22.2/x86_64-linux /opt/perl-5.22.2/lib/5.22.2 .) at /home/cpansand/.cpan/build/2019020820/BioPerl-Run-1.007003-3/blib/lib/Bio/Tools/Run/Tmhmm.pm line 76.
# BEGIN failed--compilation aborted at /home/cpansand/.cpan/build/2019020820/BioPerl-Run-1.007003-3/blib/lib/Bio/Tools/Run/Tmhmm.pm line 76.
# Compilation failed in require at t/Tmhmm.t line 9.
# BEGIN failed--compilation aborted at t/Tmhmm.t line 9.
Can't locate object method "new" via package "Bio::Tools::Run::Tmhmm" at t/Tmhmm.t line 15.
# Looks like your test exited with 255 just after 2.
t/Tmhmm.t .....................
Dubious, test returned 255 (wstat 65280, 0xff00)
Failed 8/9 subtests
# Failed test 'use Bio::Tools::Run::TribeMCL;'
# at t/TribeMCL.t line 10.
# Tried to use 'Bio::Tools::Run::TribeMCL'.
# Error: Can't locate Bio/Tools/Run/WrapperBase.pm in @INC (you may need to install the Bio::Tools::Run::WrapperBase module) (@INC contains: /home/cpansand/.cpan/build/2019020820/BioPerl-Run-1.007003-3/blib/lib /home/cpansand/.cpan/build/2019020820/BioPerl-Run-1.007003-3/blib/arch /home/cpansand/.cpan/build/2019020820/BioPerl-Run-1.007003-3/_build/lib /opt/perl-5.22.2/lib/site_perl/5.22.2/x86_64-linux /opt/perl-5.22.2/lib/site_perl/5.22.2 /opt/perl-5.22.2/lib/5.22.2/x86_64-linux /opt/perl-5.22.2/lib/5.22.2 .) at /home/cpansand/.cpan/build/2019020820/BioPerl-Run-1.007003-3/blib/lib/Bio/Tools/Run/TribeMCL.pm line 170.
# BEGIN failed--compilation aborted at /home/cpansand/.cpan/build/2019020820/BioPerl-Run-1.007003-3/blib/lib/Bio/Tools/Run/TribeMCL.pm line 170.
# Compilation failed in require at t/TribeMCL.t line 10.
# BEGIN failed--compilation aborted at t/TribeMCL.t line 10.
Can't locate object method "new" via package "Bio::Tools::Run::TribeMCL" at t/TribeMCL.t line 18.
# Looks like your test exited with 255 just after 2.
t/TribeMCL.t ..................
Dubious, test returned 255 (wstat 65280, 0xff00)
Failed 23/24 subtests
# Failed test 'use Bio::Tools::Run::Vista;'
# at t/Vista.t line 9.
# Tried to use 'Bio::Tools::Run::Vista'.
# Error: Can't locate Bio/Tools/Run/WrapperBase.pm in @INC (you may need to install the Bio::Tools::Run::WrapperBase module) (@INC contains: /home/cpansand/.cpan/build/2019020820/BioPerl-Run-1.007003-3/blib/lib /home/cpansand/.cpan/build/2019020820/BioPerl-Run-1.007003-3/blib/arch /home/cpansand/.cpan/build/2019020820/BioPerl-Run-1.007003-3/_build/lib /opt/perl-5.22.2/lib/site_perl/5.22.2/x86_64-linux /opt/perl-5.22.2/lib/site_perl/5.22.2 /opt/perl-5.22.2/lib/5.22.2/x86_64-linux /opt/perl-5.22.2/lib/5.22.2 .) at /home/cpansand/.cpan/build/2019020820/BioPerl-Run-1.007003-3/blib/lib/Bio/Tools/Run/Vista.pm line 144.
# BEGIN failed--compilation aborted at /home/cpansand/.cpan/build/2019020820/BioPerl-Run-1.007003-3/blib/lib/Bio/Tools/Run/Vista.pm line 144.
# Compilation failed in require at t/Vista.t line 9.
# BEGIN failed--compilation aborted at t/Vista.t line 9.
# Looks like you failed 1 test of 7.
t/Vista.t .....................
Dubious, test returned 1 (wstat 256, 0x100)
Failed 1/7 subtests
(less 5 skipped subtests: 1 okay)
# Failed test 'use Bio::Tools::Run::Alignment::Gmap;'
# at t/gmap-run.t line 9.
# Tried to use 'Bio::Tools::Run::Alignment::Gmap'.
# Error: Base class package "Bio::Tools::Run::WrapperBase" is empty.
# (Perhaps you need to 'use' the module which defines that package first,
# or make that module available in @INC (@INC contains: /home/cpansand/.cpan/build/2019020820/BioPerl-Run-1.007003-3/blib/lib /home/cpansand/.cpan/build/2019020820/BioPerl-Run-1.007003-3/blib/arch /home/cpansand/.cpan/build/2019020820/BioPerl-Run-1.007003-3/_build/lib /opt/perl-5.22.2/lib/site_perl/5.22.2/x86_64-linux /opt/perl-5.22.2/lib/site_perl/5.22.2 /opt/perl-5.22.2/lib/5.22.2/x86_64-linux /opt/perl-5.22.2/lib/5.22.2 .).
# at /home/cpansand/.cpan/build/2019020820/BioPerl-Run-1.007003-3/blib/lib/Bio/Tools/Run/Alignment/Gmap.pm line 99.
# BEGIN failed--compilation aborted at /home/cpansand/.cpan/build/2019020820/BioPerl-Run-1.007003-3/blib/lib/Bio/Tools/Run/Alignment/Gmap.pm line 100.
# Compilation failed in require at t/gmap-run.t line 9.
# BEGIN failed--compilation aborted at t/gmap-run.t line 9.
Can't locate object method "new" via package "Bio::Tools::Run::Alignment::Gmap" at t/gmap-run.t line 21, <GEN0> line 1.
# Looks like your test exited with 255 just after 1.
t/gmap-run.t ..................
Dubious, test returned 255 (wstat 65280, 0xff00)
Failed 8/8 subtests
# Failed test 'use Bio::Tools::Run::tRNAscanSE;'
# at t/tRNAscanSE.t line 12.
# Tried to use 'Bio::Tools::Run::tRNAscanSE'.
# Error: Can't locate Bio/Tools/Run/WrapperBase.pm in @INC (you may need to install the Bio::Tools::Run::WrapperBase module) (@INC contains: /home/cpansand/.cpan/build/2019020820/BioPerl-Run-1.007003-3/blib/lib /home/cpansand/.cpan/build/2019020820/BioPerl-Run-1.007003-3/blib/arch /home/cpansand/.cpan/build/2019020820/BioPerl-Run-1.007003-3/_build/lib /opt/perl-5.22.2/lib/site_perl/5.22.2/x86_64-linux /opt/perl-5.22.2/lib/site_perl/5.22.2 /opt/perl-5.22.2/lib/5.22.2/x86_64-linux /opt/perl-5.22.2/lib/5.22.2 .) at /home/cpansand/.cpan/build/2019020820/BioPerl-Run-1.007003-3/blib/lib/Bio/Tools/Run/tRNAscanSE.pm line 84.
# BEGIN failed--compilation aborted at /home/cpansand/.cpan/build/2019020820/BioPerl-Run-1.007003-3/blib/lib/Bio/Tools/Run/tRNAscanSE.pm line 84.
# Compilation failed in require at t/tRNAscanSE.t line 12.
# BEGIN failed--compilation aborted at t/tRNAscanSE.t line 12.
Can't locate object method "new" via package "Bio::Tools::Run::tRNAscanSE" at t/tRNAscanSE.t line 21.
# Looks like your test exited with 255 just after 3.
t/tRNAscanSE.t ................
Dubious, test returned 255 (wstat 65280, 0xff00)
Failed 10/12 subtests
Test Summary Report
-------------------
t/Amap.t (Wstat: 65280 Tests: 4 Failed: 1)
Failed test: 1
Non-zero exit status: 255
Parse errors: Bad plan. You planned 18 tests but ran 4.
t/Blat.t (Wstat: 65280 Tests: 3 Failed: 1)
Failed test: 1
Non-zero exit status: 255
Parse errors: Bad plan. You planned 39 tests but ran 3.
t/Coil.t (Wstat: 65280 Tests: 2 Failed: 1)
Failed test: 1
Non-zero exit status: 255
Parse errors: Bad plan. You planned 6 tests but ran 2.
t/Consense.t (Wstat: 65280 Tests: 2 Failed: 1)
Failed test: 1
Non-zero exit status: 255
Parse errors: Bad plan. You planned 8 tests but ran 2.
t/DBA.t (Wstat: 65280 Tests: 4 Failed: 1)
Failed test: 1
Non-zero exit status: 255
Parse errors: Bad plan. You planned 18 tests but ran 4.
t/DrawGram.t (Wstat: 65280 Tests: 2 Failed: 1)
Failed test: 1
Non-zero exit status: 255
Parse errors: Bad plan. You planned 6 tests but ran 2.
t/DrawTree.t (Wstat: 65280 Tests: 2 Failed: 1)
Failed test: 1
Non-zero exit status: 255
Parse errors: Bad plan. You planned 6 tests but ran 2.
t/EMBOSS.t (Wstat: 6400 Tests: 4 Failed: 1)
Failed test: 4
Non-zero exit status: 25
Parse errors: Bad plan. You planned 31 tests but ran 4.
t/Eponine.t (Wstat: 256 Tests: 7 Failed: 1)
Failed test: 1
Non-zero exit status: 1
t/Exonerate.t (Wstat: 65280 Tests: 1 Failed: 1)
Failed test: 1
Non-zero exit status: 255
Parse errors: Bad plan. You planned 89 tests but ran 1.
t/FastTree.t (Wstat: 65280 Tests: 3 Failed: 1)
Failed test: 2
Non-zero exit status: 255
Parse errors: Bad plan. You planned 9 tests but ran 3.
t/FootPrinter.t (Wstat: 65280 Tests: 2 Failed: 1)
Failed test: 1
Non-zero exit status: 255
Parse errors: Bad plan. You planned 24 tests but ran 2.
t/Genemark.hmm.prokaryotic.t (Wstat: 256 Tests: 99 Failed: 1)
Failed test: 1
Non-zero exit status: 1
t/Genewise.t (Wstat: 65280 Tests: 3 Failed: 1)
Failed test: 1
Non-zero exit status: 255
Parse errors: Bad plan. You planned 20 tests but ran 3.
t/Genscan.t (Wstat: 256 Tests: 6 Failed: 1)
Failed test: 1
Non-zero exit status: 1
t/Gerp.t (Wstat: 65280 Tests: 6 Failed: 1)
Failed test: 1
Non-zero exit status: 255
Parse errors: Bad plan. You planned 33 tests but ran 6.
t/Glimmer2.t (Wstat: 65280 Tests: 3 Failed: 1)
Failed test: 1
Non-zero exit status: 255
Parse errors: Bad plan. You planned 217 tests but ran 3.
t/Glimmer3.t (Wstat: 65280 Tests: 3 Failed: 1)
Failed test: 1
Non-zero exit status: 255
Parse errors: Bad plan. You planned 111 tests but ran 3.
t/Hmmer.t (Wstat: 65280 Tests: 3 Failed: 1)
Failed test: 1
Non-zero exit status: 255
Parse errors: Bad plan. You planned 27 tests but ran 3.
t/Hyphy.t (Wstat: 65280 Tests: 5 Failed: 5)
Failed tests: 1-5
Non-zero exit status: 255
Parse errors: Bad plan. You planned 10 tests but ran 5.
t/Infernal.t (Wstat: 65280 Tests: 3 Failed: 1)
Failed test: 1
Non-zero exit status: 255
Parse errors: Bad plan. You planned 43 tests but ran 3.
t/Kalign.t (Wstat: 65280 Tests: 3 Failed: 1)
Failed test: 1
Non-zero exit status: 255
Parse errors: Bad plan. You planned 8 tests but ran 3.
t/LVB.t (Wstat: 65280 Tests: 2 Failed: 1)
Failed test: 1
Non-zero exit status: 255
Parse errors: Bad plan. You planned 19 tests but ran 2.
t/Lagan.t (Wstat: 65280 Tests: 6 Failed: 1)
Failed test: 2
Non-zero exit status: 255
Parse errors: Bad plan. You planned 12 tests but ran 6.
t/MAFFT.t (Wstat: 65280 Tests: 3 Failed: 1)
Failed test: 1
Non-zero exit status: 255
Parse errors: Bad plan. You planned 23 tests but ran 3.
t/MSAProbs.t (Wstat: 65280 Tests: 6 Failed: 1)
Failed test: 1
Non-zero exit status: 255
Parse errors: Bad plan. You planned 19 tests but ran 6.
t/Mdust.t (Wstat: 65280 Tests: 2 Failed: 1)
Failed test: 1
Non-zero exit status: 255
Parse errors: Bad plan. You planned 5 tests but ran 2.
t/Molphy.t (Wstat: 65280 Tests: 3 Failed: 1)
Failed test: 2
Non-zero exit status: 255
Parse errors: Bad plan. You planned 10 tests but ran 3.
t/Muscle.t (Wstat: 65280 Tests: 5 Failed: 1)
Failed test: 1
Non-zero exit status: 255
Parse errors: Bad plan. You planned 16 tests but ran 5.
t/Neighbor.t (Wstat: 65280 Tests: 2 Failed: 2)
Failed tests: 1-2
Non-zero exit status: 255
Parse errors: Bad plan. You planned 19 tests but ran 2.
t/Njtree.t (Wstat: 65280 Tests: 4 Failed: 1)
Failed test: 2
Non-zero exit status: 255
Parse errors: Bad plan. You planned 6 tests but ran 4.
t/Pal2Nal.t (Wstat: 65280 Tests: 1 Failed: 1)
Failed test: 1
Non-zero exit status: 255
Parse errors: Bad plan. You planned 9 tests but ran 1.
t/Phyml.t (Wstat: 65280 Tests: 3 Failed: 1)
Failed test: 1
Non-zero exit status: 255
Parse errors: Bad plan. You planned 46 tests but ran 3.
t/Primate.t (Wstat: 65280 Tests: 2 Failed: 1)
Failed test: 1
Non-zero exit status: 255
Parse errors: Bad plan. You planned 8 tests but ran 2.
t/Primer3.t (Wstat: 65280 Tests: 2 Failed: 1)
Failed test: 1
Non-zero exit status: 255
Parse errors: Bad plan. You planned 9 tests but ran 2.
t/Prints.t (Wstat: 65280 Tests: 3 Failed: 1)
Failed test: 1
Non-zero exit status: 255
Parse errors: Bad plan. You planned 7 tests but ran 3.
t/Probalign.t (Wstat: 65280 Tests: 5 Failed: 1)
Failed test: 1
Non-zero exit status: 255
Parse errors: Bad plan. You planned 13 tests but ran 5.
t/Probcons.t (Wstat: 65280 Tests: 3 Failed: 1)
Failed test: 1
Non-zero exit status: 255
Parse errors: Bad plan. You planned 11 tests but ran 3.
t/Profile.t (Wstat: 65280 Tests: 3 Failed: 1)
Failed test: 1
Non-zero exit status: 255
Parse errors: Bad plan. You planned 7 tests but ran 3.
t/Promoterwise.t (Wstat: 65280 Tests: 2 Failed: 1)
Failed test: 1
Non-zero exit status: 255
Parse errors: Bad plan. You planned 9 tests but ran 2.
t/ProtDist.t (Wstat: 65280 Tests: 1 Failed: 1)
Failed test: 1
Non-zero exit status: 255
Parse errors: Bad plan. You planned 14 tests but ran 1.
t/ProtPars.t (Wstat: 65280 Tests: 1 Failed: 1)
Failed test: 1
Non-zero exit status: 255
Parse errors: Bad plan. You planned 11 tests but ran 1.
t/Pseudowise.t (Wstat: 65280 Tests: 3 Failed: 1)
Failed test: 1
Non-zero exit status: 255
Parse errors: Bad plan. You planned 18 tests but ran 3.
t/QuickTree.t (Wstat: 65280 Tests: 3 Failed: 1)
Failed test: 1
Non-zero exit status: 255
Parse errors: Bad plan. You planned 13 tests but ran 3.
t/Raxml.t (Wstat: 65280 Tests: 3 Failed: 1)
Failed test: 2
Non-zero exit status: 255
Parse errors: Bad plan. You planned 12 tests but ran 3.
t/RepeatMasker.t (Wstat: 6400 Tests: 2 Failed: 1)
Failed test: 1
Non-zero exit status: 25
Parse errors: Bad plan. You planned 12 tests but ran 2.
t/SABlastPlus.t (Wstat: 65280 Tests: 3 Failed: 3)
Failed tests: 1-3
Non-zero exit status: 255
Parse errors: Bad plan. You planned 73 tests but ran 3.
t/SLR.t (Wstat: 65280 Tests: 4 Failed: 1)
Failed test: 2
Non-zero exit status: 255
Parse errors: Bad plan. You planned 7 tests but ran 4.
t/Samtools.t (Wstat: 512 Tests: 0 Failed: 0)
Non-zero exit status: 2
Parse errors: No plan found in TAP output
t/Seg.t (Wstat: 65280 Tests: 3 Failed: 1)
Failed test: 1
Non-zero exit status: 255
Parse errors: Bad plan. You planned 8 tests but ran 3.
t/Semphy.t (Wstat: 65280 Tests: 1 Failed: 1)
Failed test: 1
Non-zero exit status: 255
Parse errors: Bad plan. You planned 19 tests but ran 1.
t/SeqBoot.t (Wstat: 65280 Tests: 2 Failed: 1)
Failed test: 1
Non-zero exit status: 255
Parse errors: Bad plan. You planned 9 tests but ran 2.
t/Signalp.t (Wstat: 65280 Tests: 3 Failed: 1)
Failed test: 1
Non-zero exit status: 255
Parse errors: Bad plan. You planned 7 tests but ran 3.
t/Sim4.t (Wstat: 65280 Tests: 4 Failed: 1)
Failed test: 1
Non-zero exit status: 255
Parse errors: Bad plan. You planned 23 tests but ran 4.
t/Simprot.t (Wstat: 65280 Tests: 4 Failed: 1)
Failed test: 2
Non-zero exit status: 255
Parse errors: Bad plan. You planned 6 tests but ran 4.
t/StandAloneFasta.t (Wstat: 6400 Tests: 2 Failed: 1)
Failed test: 1
Non-zero exit status: 25
Parse errors: Bad plan. You planned 15 tests but ran 2.
t/Tmhmm.t (Wstat: 65280 Tests: 2 Failed: 1)
Failed test: 1
Non-zero exit status: 255
Parse errors: Bad plan. You planned 9 tests but ran 2.
t/TribeMCL.t (Wstat: 65280 Tests: 2 Failed: 1)
Failed test: 1
Non-zero exit status: 255
Parse errors: Bad plan. You planned 24 tests but ran 2.
t/Vista.t (Wstat: 256 Tests: 7 Failed: 1)
Failed test: 1
Non-zero exit status: 1
t/gmap-run.t (Wstat: 65280 Tests: 1 Failed: 1)
Failed test: 1
Non-zero exit status: 255
Parse errors: Bad plan. You planned 8 tests but ran 1.
t/tRNAscanSE.t (Wstat: 65280 Tests: 3 Failed: 1)
Failed test: 1
Non-zero exit status: 255
Parse errors: Bad plan. You planned 12 tests but ran 3.
Files=70, Tests=632, 9 wallclock secs ( 0.12 usr 0.33 sys + 6.97 cusr 1.82 csys = 9.24 CPU)
Result: FAIL
Failed 61/70 test programs. 67/632 subtests failed.
------------------------------
PREREQUISITES
------------------------------
Prerequisite modules loaded:
requires:
Module Need Have
------------------ -------- --------
Bio::Root::Root 0 1.007001
Bio::Root::Version 1.007000 1.007001
perl v5.6.1 5.022002
build_requires:
Module Need Have
------------------ -------- --------
Bio::Root::Test 0 0
Bio::Root::Version 1.007000 1.007001
configure_requires:
Module Need Have
------------------ -------- --------
Module::Build 0.42 0.4224
------------------------------
ENVIRONMENT AND OTHER CONTEXT
------------------------------
Environment variables:
LANG = en_US.UTF-8
PATH = /usr/local/bin:/usr/bin:/bin:/usr/local/sbin:/usr/sbin:/sbin:/home/cpansand/bin/linux-gnu:/home/cpansand/bin/sh:/home/cpansand/bin:/usr/games:/home/cpansand/devel:/home/eserte/src/srezic-misc/scripts
PERL5LIB =
PERL5OPT =
PERL5_CPANPLUS_IS_RUNNING = 7842
PERL5_CPAN_IS_RUNNING = 7842
PERL5_CPAN_IS_RUNNING_IN_RECURSION = 29757,7842
PERLDOC = -MPod::Perldoc::ToTextOverstrike
PERL_BATCH = yes
PERL_CANARY_STABILITY_NOPROMPT = 1
PERL_CPAN_REPORTER_CONFIG = /var/tmp/cpansmoker-1023/2019020820/cpanreporter_000_config.ini
PERL_EXTUTILS_AUTOINSTALL = --defaultdeps
PERL_USE_UNSAFE_INC = 1
SHELL = /bin/zsh
TERM = screen
TMPDIR = /var/tmp/cpansmoker-1023/2019020820
Perl special variables (and OS-specific diagnostics, for MSWin32):
$^X = /opt/perl-5.22.2/bin/perl
$UID/$EUID = 1023 / 1023
$GID = 1023 1023
$EGID = 1023 1023
Perl module toolchain versions installed:
Module Have
------------------- --------
CPAN 2.22
CPAN::Meta 2.150010
Cwd 3.75
ExtUtils::CBuilder 0.280230
ExtUtils::Command 7.34
ExtUtils::Install 2.14
ExtUtils::MakeMaker 7.34
ExtUtils::Manifest 1.71
ExtUtils::ParseXS 3.35
File::Spec 3.75
JSON 4.01
JSON::PP 2.97001
Module::Build 0.4224
Module::Signature 0.83
Parse::CPAN::Meta 2.150010
Test::Harness 3.42
Test::More 1.302140
YAML 1.26
YAML::Syck 1.31
version 0.9923
--
Summary of my perl5 (revision 5 version 22 subversion 2) configuration:
Platform:
osname=linux, osvers=2.6.32-696.3.1.el6.x86_64, archname=x86_64-linux
uname='linux centos6 2.6.32-696.3.1.el6.x86_64 #1 smp tue may 30 19:52:55 utc 2017 x86_64 x86_64 x86_64 gnulinux '
config_args='-ds -e -Dprefix=/opt/perl-5.22.2 -Dcf_email=srezic@cpan.org'
hint=recommended, useposix=true, d_sigaction=define
useithreads=undef, usemultiplicity=undef
use64bitint=define, use64bitall=define, uselongdouble=undef
usemymalloc=n, bincompat5005=undef
Compiler:
cc='cc', ccflags ='-fwrapv -fno-strict-aliasing -pipe -fstack-protector -I/usr/local/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2',
optimize='-O2',
cppflags='-fwrapv -fno-strict-aliasing -pipe -fstack-protector -I/usr/local/include'
ccversion='', gccversion='4.4.7 20120313 (Red Hat 4.4.7-18)', gccosandvers=''
intsize=4, longsize=8, ptrsize=8, doublesize=8, byteorder=12345678, doublekind=3
d_longlong=define, longlongsize=8, d_longdbl=define, longdblsize=16, longdblkind=3
ivtype='long', ivsize=8, nvtype='double', nvsize=8, Off_t='off_t', lseeksize=8
alignbytes=8, prototype=define
Linker and Libraries:
ld='cc', ldflags =' -fstack-protector -L/usr/local/lib'
libpth=/usr/local/lib /usr/lib /lib/../lib64 /usr/lib/../lib64 /lib /lib64 /usr/lib64 /usr/local/lib64
libs=-lpthread -lnsl -lgdbm -ldb -ldl -lm -lcrypt -lutil -lc
perllibs=-lpthread -lnsl -ldl -lm -lcrypt -lutil -lc
libc=libc-2.12.so, so=so, useshrplib=false, libperl=libperl.a
gnulibc_version='2.12'
Dynamic Linking:
dlsrc=dl_dlopen.xs, dlext=so, d_dlsymun=undef, ccdlflags='-Wl,-E'
cccdlflags='-fPIC', lddlflags='-shared -O2 -L/usr/local/lib -fstack-protector'
Characteristics of this binary (from libperl):
Compile-time options: HAS_TIMES PERLIO_LAYERS PERL_DONT_CREATE_GVSV
PERL_HASH_FUNC_ONE_AT_A_TIME_HARD PERL_MALLOC_WRAP
PERL_NEW_COPY_ON_WRITE PERL_PRESERVE_IVUV
USE_64_BIT_ALL USE_64_BIT_INT USE_LARGE_FILES
USE_LOCALE USE_LOCALE_COLLATE USE_LOCALE_CTYPE
USE_LOCALE_NUMERIC USE_LOCALE_TIME USE_PERLIO
USE_PERL_ATOF
Built under linux
Compiled at Jun 21 2017 19:08:23
%ENV:
PERL5LIB=""
PERL5OPT=""
PERL5_CPANPLUS_IS_RUNNING="7842"
PERL5_CPAN_IS_RUNNING="7842"
PERL5_CPAN_IS_RUNNING_IN_RECURSION="29757,7842"
PERLDOC="-MPod::Perldoc::ToTextOverstrike"
PERL_BATCH="yes"
PERL_CANARY_STABILITY_NOPROMPT="1"
PERL_CPAN_REPORTER_CONFIG="/var/tmp/cpansmoker-1023/2019020820/cpanreporter_000_config.ini"
PERL_EXTUTILS_AUTOINSTALL="--defaultdeps"
PERL_USE_UNSAFE_INC="1"
@INC:
/opt/perl-5.22.2/lib/site_perl/5.22.2/x86_64-linux
/opt/perl-5.22.2/lib/site_perl/5.22.2
/opt/perl-5.22.2/lib/5.22.2/x86_64-linux
/opt/perl-5.22.2/lib/5.22.2
.