BioX-CLPM v0.01 Perl 5 v5.16.0 x86_64-linux
- Status
- Fail
- From
- Nigel Horne
- Dist
-
BioX-CLPM v0.01
- Platform
- Perl 5 v5.16.0 x86_64-linux
- Date
- 2020-02-20 14:07:01
- ID
- 441e718e-53ea-11ea-81c3-df7a5855e463
This distribution has been tested as part of the CPAN Testers
project, supporting the Perl programming language. See
http://wiki.cpantesters.org/ for more information or email
questions to cpan-testers-discuss@perl.org
--
Dear Nathan Mark Crabtree,
This is a computer-generated report for BioX-CLPM-0.01
on perl 5.16.0, created by CPAN-Reporter-1.2018.
Thank you for uploading your work to CPAN. However, there was a problem
testing your distribution.
If you think this report is invalid, please consult the CPAN Testers Wiki
for suggestions on how to avoid getting FAIL reports for missing library
or binary dependencies, unsupported operating systems, and so on:
http://wiki.cpantesters.org/wiki/CPANAuthorNotes
Sections of this report:
* Tester comments
* Program output
* Prerequisites
* Environment and other context
------------------------------
TESTER COMMENTS
------------------------------
Additional comments from tester:
this report is from an automated smoke testing program
and was not reviewed by a human for accuracy
------------------------------
PROGRAM OUTPUT
------------------------------
Output from './Build test':
# Failed test 'use BioX::CLPM::Amino;'
# at t/01.amino.t line 4.
# Tried to use 'BioX::CLPM::Amino'.
# Error: Can't locate Class/Std.pm in @INC (@INC contains: /tmp/user/1000/build/BioX-CLPM-1/blib/lib /tmp/user/1000/build/BioX-CLPM-1/blib/arch /tmp/user/1000/build/BioX-CLPM-1/blib/lib /tmp/user/1000/build/BioX-CLPM-1/blib/arch /home/njh/perl5/perlbrew/perls/perl-5.16.0-clang/lib/site_perl/5.16.0/x86_64-linux /home/njh/perl5/perlbrew/perls/perl-5.16.0-clang/lib/site_perl/5.16.0 /home/njh/perl5/perlbrew/perls/perl-5.16.0-clang/lib/5.16.0/x86_64-linux /home/njh/perl5/perlbrew/perls/perl-5.16.0-clang/lib/5.16.0 .) at /tmp/user/1000/build/BioX-CLPM-1/blib/lib/BioX/CLPM/Base.pm line 2.
# BEGIN failed--compilation aborted at /tmp/user/1000/build/BioX-CLPM-1/blib/lib/BioX/CLPM/Base.pm line 2.
# Compilation failed in require at (eval 6) line 2.
# ...propagated at /home/njh/perl5/perlbrew/perls/perl-5.16.0-clang/lib/5.16.0/base.pm line 84.
# BEGIN failed--compilation aborted at /tmp/user/1000/build/BioX-CLPM-1/blib/lib/BioX/CLPM/Amino.pm line 2.
# Compilation failed in require at t/01.amino.t line 4.
# BEGIN failed--compilation aborted at t/01.amino.t line 4.
Can't locate object method "new" via package "BioX::CLPM::Amino" at t/01.amino.t line 7.
# Looks like your test exited with 255 just after 1.
t/01.amino.t ..
Dubious, test returned 255 (wstat 65280, 0xff00)
Failed 2/2 subtests
# Failed test 'use BioX::CLPM;'
# at t/00.load.t line 4.
# Tried to use 'BioX::CLPM'.
# Error: Can't locate Class/Std.pm in @INC (@INC contains: /tmp/user/1000/build/BioX-CLPM-1/blib/lib /tmp/user/1000/build/BioX-CLPM-1/blib/arch /home/njh/perl5/perlbrew/perls/perl-5.16.0-clang/lib/site_perl/5.16.0/x86_64-linux /home/njh/perl5/perlbrew/perls/perl-5.16.0-clang/lib/site_perl/5.16.0 /home/njh/perl5/perlbrew/perls/perl-5.16.0-clang/lib/5.16.0/x86_64-linux /home/njh/perl5/perlbrew/perls/perl-5.16.0-clang/lib/5.16.0 .) at /tmp/user/1000/build/BioX-CLPM-1/blib/lib/BioX/CLPM/Base.pm line 2.
# BEGIN failed--compilation aborted at /tmp/user/1000/build/BioX-CLPM-1/blib/lib/BioX/CLPM/Base.pm line 2.
# Compilation failed in require at (eval 6) line 2.
# ...propagated at /home/njh/perl5/perlbrew/perls/perl-5.16.0-clang/lib/5.16.0/base.pm line 84.
# BEGIN failed--compilation aborted at /tmp/user/1000/build/BioX-CLPM-1/blib/lib/BioX/CLPM.pm line 2.
# Compilation failed in require at t/00.load.t line 4.
# BEGIN failed--compilation aborted at t/00.load.t line 4.
# Failed test 'use BioX::CLPM::Engine;'
# at t/00.load.t line 5.
# Tried to use 'BioX::CLPM::Engine'.
# Error: Attempt to reload BioX/CLPM/Base.pm aborted.
# Compilation failed in require at (eval 8) line 2.
# ...propagated at /home/njh/perl5/perlbrew/perls/perl-5.16.0-clang/lib/5.16.0/base.pm line 84.
# BEGIN failed--compilation aborted at /tmp/user/1000/build/BioX-CLPM-1/blib/lib/BioX/CLPM/Engine.pm line 2.
# Compilation failed in require at t/00.load.t line 5.
# BEGIN failed--compilation aborted at t/00.load.t line 5.
# Failed test 'use BioX::CLPM::Peaks;'
# at t/00.load.t line 6.
# Tried to use 'BioX::CLPM::Peaks'.
# Error: Can't locate Class/Std.pm in @INC (@INC contains: /tmp/user/1000/build/BioX-CLPM-1/blib/lib /tmp/user/1000/build/BioX-CLPM-1/blib/arch /home/njh/perl5/perlbrew/perls/perl-5.16.0-clang/lib/site_perl/5.16.0/x86_64-linux /home/njh/perl5/perlbrew/perls/perl-5.16.0-clang/lib/site_perl/5.16.0 /home/njh/perl5/perlbrew/perls/perl-5.16.0-clang/lib/5.16.0/x86_64-linux /home/njh/perl5/perlbrew/perls/perl-5.16.0-clang/lib/5.16.0 .) at /tmp/user/1000/build/BioX-CLPM-1/blib/lib/BioX/CLPM/Peaks.pm line 3.
# BEGIN failed--compilation aborted at /tmp/user/1000/build/BioX-CLPM-1/blib/lib/BioX/CLPM/Peaks.pm line 3.
# Compilation failed in require at t/00.load.t line 6.
# BEGIN failed--compilation aborted at t/00.load.t line 6.
# Failed test 'use BioX::CLPM::Linker;'
# at t/00.load.t line 7.
# Tried to use 'BioX::CLPM::Linker'.
# Error: Attempt to reload BioX/CLPM/Base.pm aborted.
# Compilation failed in require at (eval 11) line 2.
# ...propagated at /home/njh/perl5/perlbrew/perls/perl-5.16.0-clang/lib/5.16.0/base.pm line 84.
# BEGIN failed--compilation aborted at /tmp/user/1000/build/BioX-CLPM-1/blib/lib/BioX/CLPM/Linker.pm line 2.
# Compilation failed in require at t/00.load.t line 7.
# BEGIN failed--compilation aborted at t/00.load.t line 7.
# Failed test 'use BioX::CLPM::Enzyme;'
# at t/00.load.t line 8.
# Tried to use 'BioX::CLPM::Enzyme'.
# Error: Attempt to reload BioX/CLPM/Base.pm aborted.
# Compilation failed in require at (eval 13) line 2.
# ...propagated at /home/njh/perl5/perlbrew/perls/perl-5.16.0-clang/lib/5.16.0/base.pm line 84.
# BEGIN failed--compilation aborted at /tmp/user/1000/build/BioX-CLPM-1/blib/lib/BioX/CLPM/Enzyme.pm line 2.
# Compilation failed in require at t/00.load.t line 8.
# BEGIN failed--compilation aborted at t/00.load.t line 8.
# Failed test 'use BioX::CLPM::Amino;'
# at t/00.load.t line 9.
# Tried to use 'BioX::CLPM::Amino'.
# Error: Attempt to reload BioX/CLPM/Base.pm aborted.
# Compilation failed in require at (eval 15) line 2.
# ...propagated at /home/njh/perl5/perlbrew/perls/perl-5.16.0-clang/lib/5.16.0/base.pm line 84.
# BEGIN failed--compilation aborted at /tmp/user/1000/build/BioX-CLPM-1/blib/lib/BioX/CLPM/Amino.pm line 2.
# Compilation failed in require at t/00.load.t line 9.
# BEGIN failed--compilation aborted at t/00.load.t line 9.
# Failed test 'use BioX::CLPM::Sequence;'
# at t/00.load.t line 10.
# Tried to use 'BioX::CLPM::Sequence'.
# Error: Attempt to reload BioX/CLPM/Base.pm aborted.
# Compilation failed in require at (eval 17) line 2.
# ...propagated at /home/njh/perl5/perlbrew/perls/perl-5.16.0-clang/lib/5.16.0/base.pm line 84.
# BEGIN failed--compilation aborted at /tmp/user/1000/build/BioX-CLPM-1/blib/lib/BioX/CLPM/Sequence.pm line 2.
# Compilation failed in require at t/00.load.t line 10.
# BEGIN failed--compilation aborted at t/00.load.t line 10.
# Failed test 'use BioX::CLPM::Fragments;'
# at t/00.load.t line 11.
# Tried to use 'BioX::CLPM::Fragments'.
# Error: Attempt to reload BioX/CLPM/Base.pm aborted.
# Compilation failed in require at (eval 19) line 2.
# ...propagated at /home/njh/perl5/perlbrew/perls/perl-5.16.0-clang/lib/5.16.0/base.pm line 84.
# BEGIN failed--compilation aborted at /tmp/user/1000/build/BioX-CLPM-1/blib/lib/BioX/CLPM/Fragments.pm line 2.
# Compilation failed in require at t/00.load.t line 11.
# BEGIN failed--compilation aborted at t/00.load.t line 11.
# Failed test 'use BioX::CLPM::Fragments::Simple;'
# at t/00.load.t line 12.
# Tried to use 'BioX::CLPM::Fragments::Simple'.
# Error: Can't locate Class/Std.pm in @INC (@INC contains: /tmp/user/1000/build/BioX-CLPM-1/blib/lib /tmp/user/1000/build/BioX-CLPM-1/blib/arch /home/njh/perl5/perlbrew/perls/perl-5.16.0-clang/lib/site_perl/5.16.0/x86_64-linux /home/njh/perl5/perlbrew/perls/perl-5.16.0-clang/lib/site_perl/5.16.0 /home/njh/perl5/perlbrew/perls/perl-5.16.0-clang/lib/5.16.0/x86_64-linux /home/njh/perl5/perlbrew/perls/perl-5.16.0-clang/lib/5.16.0 .) at /tmp/user/1000/build/BioX-CLPM-1/blib/lib/BioX/CLPM/Fragments/Simple.pm line 3.
# BEGIN failed--compilation aborted at /tmp/user/1000/build/BioX-CLPM-1/blib/lib/BioX/CLPM/Fragments/Simple.pm line 3.
# Compilation failed in require at t/00.load.t line 12.
# BEGIN failed--compilation aborted at t/00.load.t line 12.
# Failed test 'use BioX::CLPM::Fragments::Linked;'
# at t/00.load.t line 13.
# Tried to use 'BioX::CLPM::Fragments::Linked'.
# Error: Can't locate Class/Std.pm in @INC (@INC contains: /tmp/user/1000/build/BioX-CLPM-1/blib/lib /tmp/user/1000/build/BioX-CLPM-1/blib/arch /home/njh/perl5/perlbrew/perls/perl-5.16.0-clang/lib/site_perl/5.16.0/x86_64-linux /home/njh/perl5/perlbrew/perls/perl-5.16.0-clang/lib/site_perl/5.16.0 /home/njh/perl5/perlbrew/perls/perl-5.16.0-clang/lib/5.16.0/x86_64-linux /home/njh/perl5/perlbrew/perls/perl-5.16.0-clang/lib/5.16.0 .) at /tmp/user/1000/build/BioX-CLPM-1/blib/lib/BioX/CLPM/Fragments/Linked.pm line 3.
# BEGIN failed--compilation aborted at /tmp/user/1000/build/BioX-CLPM-1/blib/lib/BioX/CLPM/Fragments/Linked.pm line 3.
# Compilation failed in require at t/00.load.t line 13.
# BEGIN failed--compilation aborted at t/00.load.t line 13.
# Failed test 'use BioX::CLPM::Matches;'
# at t/00.load.t line 14.
# Tried to use 'BioX::CLPM::Matches'.
# Error: Can't locate Class/Std.pm in @INC (@INC contains: /tmp/user/1000/build/BioX-CLPM-1/blib/lib /tmp/user/1000/build/BioX-CLPM-1/blib/arch /home/njh/perl5/perlbrew/perls/perl-5.16.0-clang/lib/site_perl/5.16.0/x86_64-linux /home/njh/perl5/perlbrew/perls/perl-5.16.0-clang/lib/site_perl/5.16.0 /home/njh/perl5/perlbrew/perls/perl-5.16.0-clang/lib/5.16.0/x86_64-linux /home/njh/perl5/perlbrew/perls/perl-5.16.0-clang/lib/5.16.0 .) at /tmp/user/1000/build/BioX-CLPM-1/blib/lib/BioX/CLPM/Matches.pm line 3.
# BEGIN failed--compilation aborted at /tmp/user/1000/build/BioX-CLPM-1/blib/lib/BioX/CLPM/Matches.pm line 3.
# Compilation failed in require at t/00.load.t line 14.
# BEGIN failed--compilation aborted at t/00.load.t line 14.
# Failed test 'use BioX::CLPM::Base;'
# at t/00.load.t line 15.
# Tried to use 'BioX::CLPM::Base'.
# Error: Attempt to reload BioX/CLPM/Base.pm aborted.
# Compilation failed in require at t/00.load.t line 15.
# BEGIN failed--compilation aborted at t/00.load.t line 15.
# Testing BioX::CLPM
# Looks like you failed 12 tests of 12.
t/00.load.t ...
Dubious, test returned 12 (wstat 3072, 0xc00)
Failed 12/12 subtests
Test Summary Report
-------------------
t/01.amino.t (Wstat: 65280 Tests: 1 Failed: 1)
Failed test: 1
Non-zero exit status: 255
Parse errors: Bad plan. You planned 2 tests but ran 1.
t/00.load.t (Wstat: 3072 Tests: 12 Failed: 12)
Failed tests: 1-12
Non-zero exit status: 12
Files=2, Tests=13, 0 wallclock secs ( 0.01 usr 0.01 sys + 0.06 cusr 0.00 csys = 0.08 CPU)
Result: FAIL
Failed 2/2 test programs. 13/13 subtests failed.
------------------------------
PREREQUISITES
------------------------------
Prerequisite modules loaded:
requires:
Module Need Have
---------- ---- --------
Test::More 0 1.302171
version 0 0.99
------------------------------
ENVIRONMENT AND OTHER CONTEXT
------------------------------
Environment variables:
AUTOMATED_TESTING = 1
HARNESS_OPTIONS = j10
LANG = en_GB.UTF-8
NONINTERACTIVE_TESTING = 1
PATH = /home/njh/perl5/perlbrew/bin:/home/njh/perl5/perlbrew/perls/perl-5.16.0-clang/bin:/usr/bin:/bin:/home/njh/src/njh/smoker/bin
PERL5LIB =
PERL5OPT =
PERL5_CPANPLUS_IS_RUNNING = 94183
PERL5_CPAN_IS_RUNNING = 94183
PERL5_CPAN_IS_RUNNING_IN_RECURSION = 94166,94183
PERLBREW_HOME = /home/njh/.perlbrew
PERLBREW_MANPATH = /home/njh/perl5/perlbrew/perls/perl-5.16.0-clang/man
PERLBREW_PATH = /home/njh/perl5/perlbrew/bin:/home/njh/perl5/perlbrew/perls/perl-5.16.0-clang/bin
PERLBREW_PERL = perl-5.16.0-clang
PERLBREW_ROOT = /home/njh/perl5/perlbrew
PERLBREW_SHELLRC_VERSION = 0.87
PERLBREW_VERSION = 0.87
PERL_MM_USE_DEFAULT = 1
PERL_USE_UNSAFE_INC = 1
SHELL = /bin/sh
TEMP = /tmp/user/1000
TMPDIR = /tmp/user/1000/testwrapper.94169
Perl special variables (and OS-specific diagnostics, for MSWin32):
$^X = /home/njh/perl5/perlbrew/perls/perl-5.16.0-clang/bin/perl5.16.0
$UID/$EUID = 1000 / 1000
$GID = 1000 4 24 25 29 30 44 46 107 112 118 996 1000
$EGID = 1000 4 24 25 29 30 44 46 107 112 118 996 1000
Perl module toolchain versions installed:
Module Have
------------------- --------
CPAN 2.27
CPAN::Meta 2.150010
Cwd 3.39_02
ExtUtils::CBuilder 0.280206
ExtUtils::Command 7.42
ExtUtils::Install 2.06
ExtUtils::MakeMaker 7.42
ExtUtils::Manifest 1.70
ExtUtils::ParseXS 3.16
File::Spec 3.39_02
JSON 4.02
JSON::PP 4.04
Module::Build 0.4229
Module::Signature n/a
Parse::CPAN::Meta 2.150010
Test::Harness 3.42
Test::More 1.302171
YAML 1.29
YAML::Syck 1.31
version 0.99
--
Summary of my perl5 (revision 5 version 16 subversion 0) configuration:
Platform:
osname=linux, osvers=5.2.0-3-amd64, archname=x86_64-linux
uname='linux microcenter 5.2.0-3-amd64 #1 smp debian 5.2.17-1 (2019-09-26) x86_64 gnulinux '
config_args='-de -Dprefix=/home/njh/perl5/perlbrew/perls/perl-5.16.0-clang -Dusedevel -Dcc=clang -Accflags= -Aeval:scriptdir=/home/njh/perl5/perlbrew/perls/perl-5.16.0-clang/bin'
hint=recommended, useposix=true, d_sigaction=define
useithreads=undef, usemultiplicity=undef
useperlio=define, d_sfio=undef, uselargefiles=define, usesocks=undef
use64bitint=define, use64bitall=define, uselongdouble=undef
usemymalloc=n, bincompat5005=undef
Compiler:
cc='clang', ccflags ='-fno-strict-aliasing -pipe -fstack-protector -I/usr/local/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64',
optimize='-O2',
cppflags='-fno-strict-aliasing -pipe -fstack-protector -I/usr/local/include'
ccversion='', gccversion='4.2.1 Compatible Clang 8.0.1 (tags/RELEASE_801/final)', gccosandvers=''
intsize=4, longsize=8, ptrsize=8, doublesize=8, byteorder=12345678
d_longlong=define, longlongsize=8, d_longdbl=define, longdblsize=16
ivtype='long', ivsize=8, nvtype='double', nvsize=8, Off_t='off_t', lseeksize=8
alignbytes=8, prototype=define
Linker and Libraries:
ld='clang', ldflags =' -fstack-protector -L/usr/local/lib'
libpth=/usr/local/lib /lib/x86_64-linux-gnu /lib/../lib /usr/lib/x86_64-linux-gnu /usr/lib/../lib /lib /usr/lib
libs=-lnsl -lgdbm -ldb -ldl -lm -lcrypt -lutil -lc
perllibs=-lnsl -ldl -lm -lcrypt -lutil -lc
libc=libc-2.29.so, so=so, useshrplib=false, libperl=libperl.a
gnulibc_version='2.29'
Dynamic Linking:
dlsrc=dl_dlopen.xs, dlext=so, d_dlsymun=undef, ccdlflags='-Wl,-E'
cccdlflags='-fPIC', lddlflags='-shared -O2 -L/usr/local/lib -fstack-protector'
Characteristics of this binary (from libperl):
Compile-time options: HAS_TIMES PERLIO_LAYERS PERL_DONT_CREATE_GVSV
PERL_MALLOC_WRAP PERL_PRESERVE_IVUV PERL_USE_DEVEL
USE_64_BIT_ALL USE_64_BIT_INT USE_LARGE_FILES
USE_LOCALE USE_LOCALE_COLLATE USE_LOCALE_CTYPE
USE_LOCALE_NUMERIC USE_PERLIO USE_PERL_ATOF
Built under linux
Compiled at Nov 7 2019 01:18:29
%ENV:
PERL5LIB=""
PERL5OPT=""
PERL5_CPANPLUS_IS_RUNNING="94183"
PERL5_CPAN_IS_RUNNING="94183"
PERL5_CPAN_IS_RUNNING_IN_RECURSION="94166,94183"
PERLBREW_HOME="/home/njh/.perlbrew"
PERLBREW_MANPATH="/home/njh/perl5/perlbrew/perls/perl-5.16.0-clang/man"
PERLBREW_PATH="/home/njh/perl5/perlbrew/bin:/home/njh/perl5/perlbrew/perls/perl-5.16.0-clang/bin"
PERLBREW_PERL="perl-5.16.0-clang"
PERLBREW_ROOT="/home/njh/perl5/perlbrew"
PERLBREW_SHELLRC_VERSION="0.87"
PERLBREW_VERSION="0.87"
PERL_MM_USE_DEFAULT="1"
PERL_USE_UNSAFE_INC="1"
@INC:
/home/njh/perl5/perlbrew/perls/perl-5.16.0-clang/lib/site_perl/5.16.0/x86_64-linux
/home/njh/perl5/perlbrew/perls/perl-5.16.0-clang/lib/site_perl/5.16.0
/home/njh/perl5/perlbrew/perls/perl-5.16.0-clang/lib/5.16.0/x86_64-linux
/home/njh/perl5/perlbrew/perls/perl-5.16.0-clang/lib/5.16.0
.