Back
From: metabase:user:314402c4-2aae-11df-837a-5e0a49663a4f
Subject: FAIL Bio-Tools-Primer3Redux-0.09 v5.8.9 GNU/Linux
Date: 2016-10-30T20:41:33Z
This distribution has been tested as part of the CPAN Testers
project, supporting the Perl programming language. See
http://wiki.cpantesters.org/ for more information or email
questions to cpan-testers-discuss@perl.org
--
Dear Christopher Fields,
This is a computer-generated report for Bio-Tools-Primer3Redux-0.09
on perl 5.8.9, created by CPAN-Reporter-1.2018.
Thank you for uploading your work to CPAN. However, there was a problem
testing your distribution.
If you think this report is invalid, please consult the CPAN Testers Wiki
for suggestions on how to avoid getting FAIL reports for missing library
or binary dependencies, unsupported operating systems, and so on:
http://wiki.cpantesters.org/wiki/CPANAuthorNotes
Sections of this report:
* Tester comments
* Program output
* Prerequisites
* Environment and other context
------------------------------
TESTER COMMENTS
------------------------------
Additional comments from tester:
none provided
------------------------------
PROGRAM OUTPUT
------------------------------
Output from './Build test':
Base class package "Bio::Tools::Run::WrapperBase" is empty.
(Perhaps you need to 'use' the module which defines that package first,
or make that module available in @INC (@INC contains: lib /tmpfs/.cpan-build-cpansand/2016103018/Bio-Tools-Primer3Redux-0.09-4/blib/lib /tmpfs/.cpan-build-cpansand/2016103018/Bio-Tools-Primer3Redux-0.09-4/blib/arch /opt/perl-5.8.9/lib/5.8.9/x86_64-linux /opt/perl-5.8.9/lib/5.8.9 /opt/perl-5.8.9/lib/site_perl/5.8.9/x86_64-linux /opt/perl-5.8.9/lib/site_perl/5.8.9 .).
at lib/Bio/Tools/Run/Primer3Redux.pm line 20.
BEGIN failed--compilation aborted at lib/Bio/Tools/Run/Primer3Redux.pm line 20.
Compilation failed in require at -e line 1.
# Failed test 'Bio::Tools::Run::Primer3Redux loaded ok'
# at t/00-compile.t line 48.
# ''
# doesn't match '(?s-xim:^\s*Bio::Tools::Run::Primer3Redux ok)'
Warning: Use of "quotemeta" without parentheses is ambiguous at /opt/perl-5.8.9/lib/site_perl/5.8.9/Test/Script.pm line 134.
# Looks like you failed 1 test of 5.
t/00-compile.t ..........
Dubious, test returned 1 (wstat 256, 0x100)
Failed 1/5 subtests
Base class package "Bio::Tools::Run::WrapperBase" is empty.
(Perhaps you need to 'use' the module which defines that package first,
or make that module available in @INC (@INC contains: /tmpfs/.cpan-build-cpansand/2016103018/Bio-Tools-Primer3Redux-0.09-4/blib/lib /tmpfs/.cpan-build-cpansand/2016103018/Bio-Tools-Primer3Redux-0.09-4/blib/arch /opt/perl-5.8.9/lib/5.8.9/x86_64-linux /opt/perl-5.8.9/lib/5.8.9 /opt/perl-5.8.9/lib/site_perl/5.8.9/x86_64-linux /opt/perl-5.8.9/lib/site_perl/5.8.9 .).
at /tmpfs/.cpan-build-cpansand/2016103018/Bio-Tools-Primer3Redux-0.09-4/blib/lib/Bio/Tools/Run/Primer3Redux.pm line 20.
BEGIN failed--compilation aborted at /tmpfs/.cpan-build-cpansand/2016103018/Bio-Tools-Primer3Redux-0.09-4/blib/lib/Bio/Tools/Run/Primer3Redux.pm line 20.
Compilation failed in require at t/Run/Primer3Redux.t line 10.
BEGIN failed--compilation aborted at t/Run/Primer3Redux.t line 10.
t/Run/Primer3Redux.t ....
Dubious, test returned 2 (wstat 512, 0x200)
No subtests run
t/release-eol.t ......... skipped: these tests are for release candidate testing
t/release-no-tabs.t ..... skipped: these tests are for release candidate testing
t/release-pod-syntax.t .. skipped: these tests are for release candidate testing
Test Summary Report
-------------------
t/00-compile.t (Wstat: 256 Tests: 5 Failed: 1)
Failed test: 5
Non-zero exit status: 1
t/Run/Primer3Redux.t (Wstat: 512 Tests: 0 Failed: 0)
Non-zero exit status: 2
Parse errors: No plan found in TAP output
Files=5, Tests=5, 1 wallclock secs ( 0.02 usr 0.03 sys + 0.42 cusr 0.11 csys = 0.58 CPU)
Result: FAIL
Failed 2/5 test programs. 1/5 subtests failed.
------------------------------
PREREQUISITES
------------------------------
Prerequisite modules loaded:
requires:
Module Need Have
------------------ -------- --------
Bio::Root::Version v1.6.900 1.007000
build_requires:
Module Need Have
------------------ -------- --------
Test::Most 0 0.35
configure_requires:
Module Need Have
------------------ -------- --------
Module::Build 0.3601 0.4220
------------------------------
ENVIRONMENT AND OTHER CONTEXT
------------------------------
Environment variables:
LANG = C
PATH = /usr/local/bin:/usr/bin:/bin:/usr/local/sbin:/usr/sbin:/sbin:/home/cpansand/bin/linux-gnu:/home/cpansand/bin/sh:/home/cpansand/bin:/usr/games:/home/cpansand/devel:/home/eserte/src/srezic-misc/scripts
PERL5LIB =
PERL5OPT =
PERL5_CPANPLUS_IS_RUNNING = 22246
PERL5_CPAN_IS_RUNNING = 22246
PERL5_CPAN_IS_RUNNING_IN_RECURSION = 16560,22246
PERLDOC = -MPod::Perldoc::ToTextOverstrike
PERL_BATCH = yes
PERL_CANARY_STABILITY_NOPROMPT = 1
PERL_CPAN_REPORTER_CONFIG = /run/user/1023/cpansmoker/2016103018/cpanreporter_008_config.ini
PERL_EXTUTILS_AUTOINSTALL = --defaultdeps
PERL_USE_UNSAFE_INC = 1
SHELL = /bin/zsh
TERM = screen
TMPDIR = /run/user/1023/cpansmoker/2016103018
Perl special variables (and OS-specific diagnostics, for MSWin32):
$^X = /bbbike/perl-5.8.9/bin/perl
$UID/$EUID = 1023 / 1023
$GID = 1023 1023
$EGID = 1023 1023
Perl module toolchain versions installed:
Module Have
------------------- --------
CPAN 2.14
CPAN::Meta 2.150010
Cwd 3.62
ExtUtils::CBuilder 0.280224
ExtUtils::Command 7.24
ExtUtils::Install 1.54
ExtUtils::MakeMaker 7.24
ExtUtils::Manifest 1.70
ExtUtils::ParseXS 3.30
File::Spec 3.62
JSON 2.90
JSON::PP 2.27400
Module::Build 0.4220
Module::Signature 0.80
Parse::CPAN::Meta 2.150010
Test::Harness 3.36
Test::More 1.302062
YAML 1.15
YAML::Syck 1.29
version 0.9916
--
Summary of my perl5 (revision 5 version 8 subversion 9) configuration:
Platform:
osname=linux, osvers=3.16.0-4-amd64, archname=x86_64-linux
uname='linux eserte 3.16.0-4-amd64 #1 smp debian 3.16.7-ckt25-2 (2016-04-08) x86_64 gnulinux '
config_args='-ds -e -Dprefix=/opt/perl-5.8.9 -Dcf_email=srezic@cpan.org'
hint=recommended, useposix=true, d_sigaction=define
usethreads=undef use5005threads=undef useithreads=undef usemultiplicity=undef
useperlio=define d_sfio=undef uselargefiles=define usesocks=undef
use64bitint=define use64bitall=define uselongdouble=undef
usemymalloc=n, bincompat5005=undef
Compiler:
cc='cc', ccflags ='-fno-strict-aliasing -pipe -I/usr/local/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64',
optimize='-O2',
cppflags='-fno-strict-aliasing -pipe -I/usr/local/include'
ccversion='', gccversion='4.9.2', gccosandvers=''
intsize=4, longsize=8, ptrsize=8, doublesize=8, byteorder=12345678
d_longlong=define, longlongsize=8, d_longdbl=define, longdblsize=16
ivtype='long', ivsize=8, nvtype='double', nvsize=8, Off_t='off_t', lseeksize=8
alignbytes=8, prototype=define
Linker and Libraries:
ld='cc', ldflags =' -L/usr/local/lib'
libpth=/usr/local/lib /lib/x86_64-linux-gnu /lib/../lib /usr/lib/x86_64-linux-gnu /usr/lib/../lib /lib /usr/lib
libs=-lnsl -ldl -lm -lcrypt -lutil -lc
perllibs=-lnsl -ldl -lm -lcrypt -lutil -lc
libc=libc-2.19.so, so=so, useshrplib=false, libperl=libperl.a
gnulibc_version='2.19'
Dynamic Linking:
dlsrc=dl_dlopen.xs, dlext=so, d_dlsymun=undef, ccdlflags='-Wl,-E'
cccdlflags='-fPIC', lddlflags='-shared -O2 -L/usr/local/lib'
Characteristics of this binary (from libperl):
Compile-time options: PERL_MALLOC_WRAP USE_64_BIT_ALL USE_64_BIT_INT
USE_FAST_STDIO USE_LARGE_FILES USE_PERLIO
Locally applied patches:
Devel::PatchPerl 1.42
Built under linux
Compiled at May 7 2016 09:05:30
%ENV:
PERL5LIB=""
PERL5OPT=""
PERL5_CPANPLUS_IS_RUNNING="22246"
PERL5_CPAN_IS_RUNNING="22246"
PERL5_CPAN_IS_RUNNING_IN_RECURSION="16560,22246"
PERLDOC="-MPod::Perldoc::ToTextOverstrike"
PERL_BATCH="yes"
PERL_CANARY_STABILITY_NOPROMPT="1"
PERL_CPAN_REPORTER_CONFIG="/run/user/1023/cpansmoker/2016103018/cpanreporter_008_config.ini"
PERL_EXTUTILS_AUTOINSTALL="--defaultdeps"
PERL_USE_UNSAFE_INC="1"
@INC:
/opt/perl-5.8.9/lib/5.8.9/x86_64-linux
/opt/perl-5.8.9/lib/5.8.9
/opt/perl-5.8.9/lib/site_perl/5.8.9/x86_64-linux
/opt/perl-5.8.9/lib/site_perl/5.8.9
.