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From: metabase:user:30977d10-2aae-11df-837a-5e0a49663a4f
Subject: FAIL BioX-SeqUtils-Promoter-0.1.1 v5.14.1 GNU/Linux
Date: 2011-07-09T11:26:06Z
This distribution has been tested as part of the CPAN Testers
project, supporting the Perl programming language. See
http://wiki.cpantesters.org/ for more information or email
questions to cpan-testers-discuss@perl.org
--
Dear Charles Stephen Embry,
This is a computer-generated report for BioX-SeqUtils-Promoter-0.1.1
on perl 5.14.1, created by CPAN-Reporter-1.1902.
Thank you for uploading your work to CPAN. However, there was a problem
testing your distribution.
If you think this report is invalid, please consult the CPAN Testers Wiki
for suggestions on how to avoid getting FAIL reports for missing library
or binary dependencies, unsupported operating systems, and so on:
http://wiki.cpantesters.org/wiki/CPANAuthorNotes
Sections of this report:
* Tester comments
* Program output
* Prerequisites
* Environment and other context
------------------------------
TESTER COMMENTS
------------------------------
Additional comments from tester:
this report is from an automated smoke testing program
and was not reviewed by a human for accuracy
------------------------------
PROGRAM OUTPUT
------------------------------
Output from '/usr/bin/make test':
PERL_DL_NONLAZY=1 /home/trushel/perl/perl5141m/bin/perl "-MExtUtils::Command::MM" "-e" "test_harness(0, 'blib/lib', 'blib/arch')" t/*.t
# Testing BioX::SeqUtils::Promoter 0.1.1
t/00.load.t ....... ok
t/10.length.t ..... ok
# Failed test 'use BioX::SeqUtils::Promoter::Alignment;'
# at t/10.load.t line 10.
# Tried to use 'BioX::SeqUtils::Promoter::Alignment'.
# Error: Can't locate Bio/Perl.pm in @INC (@INC contains: /home/trushel/cpan/build/5.14.1-m/BioX-SeqUtils-Promoter-2bIqT5/blib/lib /home/trushel/cpan/build/5.14.1-m/BioX-SeqUtils-Promoter-2bIqT5/blib/arch /home/trushel/perl/perl5141m/lib/site_perl/5.14.1/x86_64-linux-multi /home/trushel/perl/perl5141m/lib/site_perl/5.14.1 /home/trushel/perl/perl5141m/lib/5.14.1/x86_64-linux-multi /home/trushel/perl/perl5141m/lib/5.14.1 .) at /home/trushel/cpan/build/5.14.1-m/BioX-SeqUtils-Promoter-2bIqT5/blib/lib/BioX/SeqUtils/Promoter/Alignment.pm line 17.
# BEGIN failed--compilation aborted at /home/trushel/cpan/build/5.14.1-m/BioX-SeqUtils-Promoter-2bIqT5/blib/lib/BioX/SeqUtils/Promoter/Alignment.pm line 17.
# Compilation failed in require at (eval 9) line 2.
# BEGIN failed--compilation aborted at (eval 9) line 2.
# Failed test 'use BioX::SeqUtils::Promoter::SaveTypes::RImage;'
# at t/10.load.t line 58.
# Tried to use 'BioX::SeqUtils::Promoter::SaveTypes::RImage'.
# Error: Attempt to reload BioX/SeqUtils/Promoter/Alignment.pm aborted.
# Compilation failed in require at /home/trushel/cpan/build/5.14.1-m/BioX-SeqUtils-Promoter-2bIqT5/blib/lib/BioX/SeqUtils/Promoter/SaveTypes/RImage.pm line 16.
# BEGIN failed--compilation aborted at /home/trushel/cpan/build/5.14.1-m/BioX-SeqUtils-Promoter-2bIqT5/blib/lib/BioX/SeqUtils/Promoter/SaveTypes/RImage.pm line 16.
# Compilation failed in require at (eval 19) line 2.
# BEGIN failed--compilation aborted at (eval 19) line 2.
# Testing BioX::SeqUtils::Promoter 0.1.1
Use of uninitialized value $BioX::SeqUtils::Promoter::Alignment::VERSION in concatenation (.) or string at t/10.load.t line 13.
# Testing BioX::SeqUtils::Promoter::Alignment
# Testing BioX::SeqUtils::Promoter::Annotations 0.1.1
# Testing BioX::SeqUtils::Promoter::Annotations::Base 0.1.1
# Testing BioX::SeqUtils::Promoter::Annotations::CG 0.1.1
# Testing BioX::SeqUtils::Promoter::Annotations::Consensus 0.1.1
# Testing BioX::SeqUtils::Promoter::Base 0.1.1
# Testing BioX::SeqUtils::Promoter::SaveTypes 0.1.1
# Testing BioX::SeqUtils::Promoter::SaveTypes::Base 0.1.1
Use of uninitialized value $BioX::SeqUtils::Promoter::SaveTypes::RImage::VERSION in concatenation (.) or string at t/10.load.t line 61.
# Testing BioX::SeqUtils::Promoter::SaveTypes::RImage
# Testing BioX::SeqUtils::Promoter::SaveTypes::Text 0.1.1
# Testing BioX::SeqUtils::Promoter::Sequence 0.1.1
# Testing BioX::SeqUtils::Promoter::Sequences 0.1.1
# Looks like you failed 2 tests of 13.
t/10.load.t .......
Dubious, test returned 2 (wstat 512, 0x200)
Failed 2/13 subtests
Argument "ATGCGNTTANTCG" isn't numeric in numeric eq (==) at t/10.sequence.t line 23.
Argument "ATGCGNTTANTCG" isn't numeric in numeric eq (==) at t/10.sequence.t line 23.
t/10.sequence.t ... ok
Name "main::tstring3" used only once: possible typo at t/10.sequences.t line 7.
t/10.sequences.t ..
Failed 1/2 subtests
t/11.new.t ........ ok
Test Summary Report
-------------------
t/10.load.t (Wstat: 512 Tests: 13 Failed: 2)
Failed tests: 2, 10
Non-zero exit status: 2
t/10.sequences.t (Wstat: 0 Tests: 1 Failed: 0)
Parse errors: Tests out of sequence. Found (2) but expected (1)
Bad plan. You planned 2 tests but ran 1.
Files=6, Tests=22, 0 wallclock secs ( 0.02 usr 0.02 sys + 0.27 cusr 0.01 csys = 0.32 CPU)
Result: FAIL
Failed 2/6 test programs. 2/22 subtests failed.
make: *** [test_dynamic] Error 255
------------------------------
PREREQUISITES
------------------------------
Prerequisite modules loaded:
requires:
Module Need Have
------------------- ---- -------
Test::More 0 0.98
version 0 0.91
build_requires:
Module Need Have
------------------- ---- -------
ExtUtils::MakeMaker 0 6.57_11
------------------------------
ENVIRONMENT AND OTHER CONTEXT
------------------------------
Environment variables:
AUTOMATED_TESTING = 1
LANG = en_US.UTF-8
LANGUAGE = en
LC_COLLATE = C
LC_MONETARY = C
LC_NUMERIC = C
LC_TIME = C
PATH = /usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
PERL5LIB =
PERL5OPT =
PERL5_CPANPLUS_IS_RUNNING = 9194
PERL5_CPAN_IS_RUNNING = 9194
PERL5_CPAN_IS_RUNNING_IN_RECURSION = 2472,9194
PERL_CR_SMOKER_CURRENT = BioX-SeqUtils-Promoter-0.1.1
PERL_EXTUTILS_AUTOINSTALL = --defaultdeps
PERL_MM_USE_DEFAULT = 1
SHELL = /bin/bash
TERM = xterm
Perl special variables (and OS-specific diagnostics, for MSWin32):
$^X = /home/trushel/perl/perl5141m/bin/perl
$UID/$EUID = 138375 / 138375
$GID = 5762 4 20 21 24 25 26 30 44 46 104 105 119 122 431 5762
$EGID = 5762 4 20 21 24 25 26 30 44 46 104 105 119 122 431 5762
Perl module toolchain versions installed:
Module Have
------------------- --------
CPAN 1.9600
Cwd 3.36
ExtUtils::CBuilder 0.280203
ExtUtils::Command 1.17
ExtUtils::Install 1.54
ExtUtils::MakeMaker 6.57_11
ExtUtils::Manifest 1.58
ExtUtils::ParseXS 2.2206
File::Spec 3.33
Module::Build 0.3800
Module::Signature 0.68
Test::Harness 3.23
Test::More 0.98
YAML 0.73
YAML::Syck 1.17
version 0.91
--
Summary of my perl5 (revision 5 version 14 subversion 1) configuration:
Platform:
osname=linux, osvers=2.6.32-32-generic, archname=x86_64-linux-multi
uname='linux trushel-glaptop 2.6.32-32-generic #62-ubuntu smp wed apr 20 21:52:38 utc 2011 x86_64 gnulinux '
config_args=''
hint=recommended, useposix=true, d_sigaction=define
useithreads=undef, usemultiplicity=define
useperlio=define, d_sfio=undef, uselargefiles=define, usesocks=undef
use64bitint=define, use64bitall=define, uselongdouble=undef
usemymalloc=n, bincompat5005=undef
Compiler:
cc='cc', ccflags ='-fno-strict-aliasing -pipe -fstack-protector -I/usr/local/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64',
optimize='-O2',
cppflags='-fno-strict-aliasing -pipe -fstack-protector -I/usr/local/include'
ccversion='', gccversion='4.4.3', gccosandvers=''
intsize=4, longsize=8, ptrsize=8, doublesize=8, byteorder=12345678
d_longlong=define, longlongsize=8, d_longdbl=define, longdblsize=16
ivtype='long', ivsize=8, nvtype='double', nvsize=8, Off_t='off_t', lseeksize=8
alignbytes=8, prototype=define
Linker and Libraries:
ld='cc', ldflags =' -fstack-protector -L/usr/local/lib'
libpth=/usr/local/lib /lib/../lib /usr/lib/../lib /lib /usr/lib /usr/lib/x86_64-linux-gnu /lib64 /usr/lib64
libs=-lnsl -ldl -lm -lcrypt -lutil -lc
perllibs=-lnsl -ldl -lm -lcrypt -lutil -lc
libc=/lib/libc-2.11.1.so, so=so, useshrplib=false, libperl=libperl.a
gnulibc_version='2.11.1'
Dynamic Linking:
dlsrc=dl_dlopen.xs, dlext=so, d_dlsymun=undef, ccdlflags='-Wl,-E'
cccdlflags='-fPIC', lddlflags='-shared -O2 -L/usr/local/lib -fstack-protector'
Characteristics of this binary (from libperl):
Compile-time options: MULTIPLICITY PERL_DONT_CREATE_GVSV
PERL_IMPLICIT_CONTEXT PERL_MALLOC_WRAP
PERL_PRESERVE_IVUV USE_64_BIT_ALL USE_64_BIT_INT
USE_LARGE_FILES USE_PERLIO USE_PERL_ATOF
Built under linux
Compiled at Jun 22 2011 23:18:17
%ENV:
PERL5LIB=""
PERL5OPT=""
PERL5_CPANPLUS_IS_RUNNING="9194"
PERL5_CPAN_IS_RUNNING="9194"
PERL5_CPAN_IS_RUNNING_IN_RECURSION="2472,9194"
PERL_CR_SMOKER_CURRENT="BioX-SeqUtils-Promoter-0.1.1"
PERL_EXTUTILS_AUTOINSTALL="--defaultdeps"
PERL_MM_USE_DEFAULT="1"
@INC:
/home/trushel/perl/perl5141m/lib/site_perl/5.14.1/x86_64-linux-multi
/home/trushel/perl/perl5141m/lib/site_perl/5.14.1
/home/trushel/perl/perl5141m/lib/5.14.1/x86_64-linux-multi
/home/trushel/perl/perl5141m/lib/5.14.1
.