GOBO v0.03 Perl 5 v5.13.2 MSWin32-x86-multi-thread
- Status
- Fail
- From
- Serguei Trouchelle (STRO)
- Dist
-
GOBO v0.03
- Platform
- Perl 5 v5.13.2 MSWin32-x86-multi-thread
- Date
- 2010-07-07 10:19:32
- ID
- 393db079-ab7e-1018-b1f8-fb32d2bf88b9
This distribution has been tested as part of the CPAN Testers
project, supporting the Perl programming language. See
http://wiki.cpantesters.org/ for more information or email
questions to cpan-testers-discuss@perl.org
--
Dear Chris Mungall,
This is a computer-generated report for GOBO-0.03
on perl 5.13.2, created by CPAN-Reporter-1.1711.
Thank you for uploading your work to CPAN. However, there was a problem
testing your distribution.
If you think this report is invalid, please consult the CPAN Testers Wiki
for suggestions on how to avoid getting FAIL reports for missing library
or binary dependencies, unsupported operating systems, and so on:
http://wiki.cpantesters.org/wiki/CPANAuthorNotes
Sections of this report:
* Tester comments
* Program output
* Prerequisites
* Environment and other context
------------------------------
TESTER COMMENTS
------------------------------
Additional comments from tester:
this report is from an automated smoke testing program
and was not reviewed by a human for accuracy
------------------------------
PROGRAM OUTPUT
------------------------------
Output from 'C:\bin\dev\perl\site\bin\dmake.EXE test':
C:\home\stro\perl\perl5132\bin\perl.exe "-MExtUtils::Command::MM" "-e" "test_harness(0, 'blib\lib', 'blib\arch')" t/*.t
t/analysis_test.t ............ ok
Use of uninitialized value in string eq at t/classexpr.t line 19.
Use of uninitialized value in string eq at t/classexpr.t line 29.
Use of uninitialized value in string eq at t/classexpr.t line 67.
t/classexpr.t ................ ok
t/dbconnect.t ................ ok
"my" variable $w masks earlier declaration in same scope at t/gaf_inference_test.t line 71.
inferred FB:FBgn0010339 "128up" GO:0005525 --> GO:0046123 "purine deoxyribonucleoside biosynthetic process"
t/gaf_inference_test.t ....... ok
t/gaftest.t .................. ok
t/gaftest_chunked.t .......... ok
t/gaftest_chunked_gzipped.t .. ok
graph: $VAR1 = bless( {
'annotation_ix' => bless( {
'ixN' => {},
'ixT' => {}
}, 'GOBO::Indexes::StatementIndex' ),
'comment' => 'cvs version: $Revision: 1.239 $',
'date' => bless( {
'formatter' => undef,
'local_c' => {
'day' => 14,
'day_of_quarter' => 14,
'day_of_week' => 2,
'day_of_year' => 195,
'hour' => 13,
'minute' => 33,
'month' => 7,
'quarter' => 3,
'second' => 0,
'year' => 2009
},
'local_rd_days' => 733602,
'local_rd_secs' => 48780,
'locale' => bless( {
'default_date_format_length' => 'medium',
'default_time_format_length' => 'medium',
'en_complete_name' => 'English United States',
'en_language' => 'English',
'en_territory' => 'United States',
'id' => 'en_US',
'native_complete_name' => 'English United States',
'native_language' => 'English',
'native_territory' => 'United States'
}, 'DateTime::Locale::en_US' ),
'offset_modifier' => 0,
'rd_nanosecs' => 0,
'tz' => bless( {
'name' => 'floating',
'offset' => 0
}, 'DateTime::TimeZone::Floating' ),
'utc_rd_days' => 733602,
'utc_rd_secs' => 48780,
'utc_year' => 2010
}, 'DateTime' ),
'formulae' => [],
'instance_h' => {},
'link_ix' => bless( {
'ixN' => {
'GO:0000001' => [
bless( {
'node' => bless( {
'id' => 'GO:0000001',
'label' => 'test term GO:0000001',
'namespace' => 'test_ontology',
'subsets' => [
bless( {
'id' => 'test_goslim',
'label' => 'Test GO slim',
'verbose' => 0
}, 'GOBO::Subset' ),
bless( {
'id' => 'test_next_goslim',
'label' => 'Second test set',
'verbose' => 0
}, 'GOBO::Subset' )
],
'verbose' => 0
}, 'GOBO::TermNode' ),
'relation' => bless( {
'anti_symmetric' => 1,
'id' => 'is_a',
'reflexive' => 1,
'transitive' => 1,
'verbose' => 0
}, 'GOBO::RelationNode' ),
'target' => bless( {
'id' => 'GO:0000008',
'label' => 'test term GO:0000008',
'namespace' => 'test_ontology',
'subsets' => [
$VAR1->{'link_ix'}{'ixN'}{'GO:0000001'}[0]{'node'}{'subsets'}[1]
],
'verbose' => 0
}, 'GOBO::TermNode' )
}, 'GOBO::LinkStatement' ),
bless( {
'node' => $VAR1->{'link_ix'}{'ixN'}{'GO:0000001'}[0]{'node'},
'relation' => bless( {
'id' => 'part_of',
'label' => 'part_of',
'namespace' => 'test_ontology',
'transitive' => 1,
'verbose' => 0
}, 'GOBO::RelationNode' ),
'target' => $VAR1->{'link_ix'}{'ixN'}{'GO:0000001'}[0]{'target'}
}, 'GOBO::LinkStatement' ),
bless( {
'node' => $VAR1->{'link_ix'}{'ixN'}{'GO:0000001'}[0]{'node'},
'relation' => bless( {
'id' => 'regulates',
'label' => 'regulates',
'namespace' => 'test_ontology',
'transitive_over' => $VAR1->{'link_ix'}{'ixN'}{'GO:0000001'}[1]{'relation'},
'verbose' => 0
}, 'GOBO::RelationNode' ),
'target' => $VAR1->{'link_ix'}{'ixN'}{'GO:0000001'}[0]{'target'}
}, 'GOBO::LinkStatement' )
],
'GO:0000002' => [
bless( {
'node' => bless( {
'id' => 'GO:0000002',
'label' => 'test term GO:0000002',
'namespace' => 'test_ontology',
'subsets' => [
$VAR1->{'link_ix'}{'ixN'}{'GO:0000001'}[0]{'node'}{'subsets'}[0],
$VAR1->{'link_ix'}{'ixN'}{'GO:0000001'}[0]{'node'}{'subsets'}[1]
],
'verbose' => 0
}, 'GOBO::TermNode' ),
'relation' => bless( {
'anti_symmetric' => 1,
'id' => 'is_a',
'reflexive' => 1,
'transitive' => 1,
'verbose' => 0
}, 'GOBO::RelationNode' ),
'target' => bless( {
'id' => 'GO:0000006',
'label' => 'test term GO:0000006',
'namespace' => 'test_ontology',
'subsets' => [
$VAR1->{'link_ix'}{'ixN'}{'GO:0000001'}[0]{'node'}{'subsets'}[0]
],
'verbose' => 0
}, 'GOBO::TermNode' )
}, 'GOBO::LinkStatement' ),
bless( {
'node' => $VAR1->{'link_ix'}{'ixN'}{'GO:0000002'}[0]{'node'},
'relation' => bless( {
'anti_symmetric' => 1,
'id' => 'is_a',
'reflexive' => 1,
'transitive' => 1,
'verbose' => 0
}, 'GOBO::RelationNode' ),
'target' => bless( {
'id' => 'GO:0000007',
'label' => 'test term GO:0000007',
'namespace' => 'test_ontology',
'subsets' => [
$VAR1->{'link_ix'}{'ixN'}{'GO:0000001'}[0]{'node'}{'subsets'}[0]
],
'verbose' => 0
}, 'GOBO::TermNode' )
}, 'GOBO::LinkStatement' )
],
'GO:0000003' => [
bless( {
'node' => bless( {
'id' => 'GO:0000003',
'label' => 'test term GO:0000003',
'namespace' => 'test_ontology',
'subsets' => [
$VAR1->{'link_ix'}{'ixN'}{'GO:0000001'}[0]{'node'}{'subsets'}[0],
$VAR1->{'link_ix'}{'ixN'}{'GO:0000001'}[0]{'node'}{'subsets'}[1]
],
'verbose' => 0
}, 'GOBO::TermNode' ),
'relation' => $VAR1->{'link_ix'}{'ixN'}{'GO:0000001'}[1]{'relation'},
'target' => $VAR1->{'link_ix'}{'ixN'}{'GO:0000002'}[1]{'target'}
}, 'GOBO::LinkStatement' )
],
'GO:0000004' => [
bless( {
'node' => bless( {
'id' => 'GO:0000004',
'label' => 'test term GO:0000004',
'namespace' => 'test_ontology',
'subsets' => [
$VAR1->{'link_ix'}{'ixN'}{'GO:0000001'}[0]{'node'}{'subsets'}[0]
],
'verbose' => 0
}, 'GOBO::TermNode' ),
'relation' => bless( {
'anti_symmetric' => 1,
'id' => 'is_a',
'reflexive' => 1,
'transitive' => 1,
'verbose' => 0
}, 'GOBO::RelationNode' ),
'target' => bless( {
'id' => 'GO:0000012',
'label' => 'test term GO:0000012',
'namespace' => 'test_ontology',
'verbose' => 0
}, 'GOBO::TermNode' )
}, 'GOBO::LinkStatement' ),
bless( {
'node' => $VAR1->{'link_ix'}{'ixN'}{'GO:0000004'}[0]{'node'},
'relation' => bless( {
'id' => 'positively_regulates',
'label' => 'positively_regulates',
'namespace' => 'test_ontology',
'subrelation_of_list' => [
$VAR1->{'link_ix'}{'ixN'}{'GO:0000001'}[2]{'relation'}
],
'verbose' => 0
}, 'GOBO::RelationNode' ),
'target' => bless( {
'id' => 'GO:0000015',
'label' => 'test term GO:0000015',
'namespace' => 'test_ontology',
'subsets' => [
$VAR1->{'link_ix'}{'ixN'}{'GO:0000001'}[0]{'node'}{'subsets'}[0]
],
'verbose' => 0
}, 'GOBO::TermNode' )
}, 'GOBO::LinkStatement' ),
bless( {
'node' => $VAR1->{'link_ix'}{'ixN'}{'GO:0000004'}[0]{'node'},
'relation' => bless( {
'id' => 'negatively_regulates',
'label' => 'negatively_regulates',
'namespace' => 'test_ontology',
'subrelation_of_list' => [
$VAR1->{'link_ix'}{'ixN'}{'GO:0000001'}[2]{'relation'}
],
'verbose' => 0
}, 'GOBO::RelationNode' ),
'target' => bless( {
'id' => 'GO:0000016',
'label' => 'test term GO:0000016',
'namespace' => 'test_ontology',
'verbose' => 0
}, 'GOBO::TermNode' )
}, 'GOBO::LinkStatement' )
],
'GO:0000005' => [
bless( {
'node' => bless( {
'id' => 'GO:0000005',
'label' => 'test term GO:0000005',
'namespace' => 'test_ontology',
'subsets' => [
$VAR1->{'link_ix'}{'ixN'}{'GO:0000001'}[0]{'node'}{'subsets'}[0],
$VAR1->{'link_ix'}{'ixN'}{'GO:0000001'}[0]{'node'}{'subsets'}[1]
],
'verbose' => 0
}, 'GOBO::TermNode' ),
'relation' => $VAR1->{'link_ix'}{'ixN'}{'GO:0000001'}[2]{'relation'},
'target' => $VAR1->{'link_ix'}{'ixN'}{'GO:0000001'}[0]{'target'}
}, 'GOBO::LinkStatement' )
],
'GO:0000006' => [
bless( {
'node' => $VAR1->{'link_ix'}{'ixN'}{'GO:0000002'}[0]{'target'},
'relation' => bless( {
'anti_symmetric' => 1,
'id' => 'is_a',
'reflexive' => 1,
'transitive' => 1,
'verbose' => 0
}, 'GOBO::RelationNode' ),
'target' => bless( {
'id' => 'GO:0000009',
'label' => 'test term GO:0000009',
'namespace' => 'test_ontology',
'verbose' => 0
}, 'GOBO::TermNode' )
}, 'GOBO::LinkStatement' )
],
'GO:0000007' => [
bless( {
'node' => $VAR1->{'link_ix'}{'ixN'}{'GO:0000002'}[1]{'target'},
'relation' => $VAR1->{'link_ix'}{'ixN'}{'GO:0000001'}[1]{'relation'},
'target' => bless( {
'id' => 'GO:0000011',
'label' => 'test term GO:0000011',
'namespace' => 'test_ontology',
'verbose' => 0
}, 'GOBO::TermNode' )
}, 'GOBO::LinkStatement' )
],
'GO:0000008' => [
bless( {
'node' => $VAR1->{'link_ix'}{'ixN'}{'GO:0000001'}[0]{'target'},
'relation' => $VAR1->{'link_ix'}{'ixN'}{'GO:0000004'}[2]{'relation'},
'target' => bless( {
'id' => 'GO:0000010',
'label' => 'test term GO:0000010',
'namespace' => 'test_ontology',
'subsets' => [
$VAR1->{'link_ix'}{'ixN'}{'GO:0000001'}[0]{'node'}{'subsets'}[0]
],
'verbose' => 0
}, 'GOBO::TermNode' )
}, 'GOBO::LinkStatement' )
],
'GO:0000009' => [
bless( {
'node' => $VAR1->{'link_ix'}{'ixN'}{'GO:0000006'}[0]{'target'},
'relation' => bless( {
'anti_symmetric' => 1,
'id' => 'is_a',
'reflexive' => 1,
'transitive' => 1,
'verbose' => 0
}, 'GOBO::RelationNode' ),
'target' => $VAR1->{'link_ix'}{'ixN'}{'GO:0000008'}[0]{'target'}
}, 'GOBO::LinkStatement' )
],
'GO:0000010' => [
bless( {
'node' => $VAR1->{'link_ix'}{'ixN'}{'GO:0000008'}[0]{'target'},
'relation' => bless( {
'anti_symmetric' => 1,
'id' => 'is_a',
'reflexive' => 1,
'transitive' => 1,
'verbose' => 0
}, 'GOBO::RelationNode' ),
'target' => bless( {
'id' => 'GO:0000018',
'label' => 'test term GO:0000018',
'namespace' => 'test_ontology',
'verbose' => 0
}, 'GOBO::TermNode' )
}, 'GOBO::LinkStatement' )
],
'GO:0000011' => [
bless( {
'node' => $VAR1->{'link_ix'}{'ixN'}{'GO:0000007'}[0]{'target'},
'relation' => bless( {
'anti_symmetric' => 1,
'id' => 'is_a',
'reflexive' => 1,
'transitive' => 1,
'verbose' => 0
}, 'GOBO::RelationNode' ),
'target' => $VAR1->{'link_ix'}{'ixN'}{'GO:0000008'}[0]{'target'}
}, 'GOBO::LinkStatement' )
],
'GO:0000012' => [
bless( {
'node' => $VAR1->{'link_ix'}{'ixN'}{'GO:0000004'}[0]{'target'},
'relation' => bless( {
'anti_symmetric' => 1,
'id' => 'is_a',
'reflexive' => 1,
'transitive' => 1,
'verbose' => 0
}, 'GOBO::RelationNode' ),
'target' => bless( {
'id' => 'GO:0000013',
'label' => 'test term GO:0000013',
'namespace' => 'test_ontology',
'subsets' => [
$VAR1->{'link_ix'}{'ixN'}{'GO:0000001'}[0]{'node'}{'subsets'}[1]
],
'verbose' => 0
}, 'GOBO::TermNode' )
}, 'GOBO::LinkStatement' )
],
'GO:0000013' => [
bless( {
'node' => $VAR1->{'link_ix'}{'ixN'}{'GO:0000012'}[0]{'target'},
'relation' => bless( {
'anti_symmetric' => 1,
'id' => 'is_a',
'reflexive' => 1,
'transitive' => 1,
'verbose' => 0
}, 'GOBO::RelationNode' ),
'target' => bless( {
'id' => 'GO:0000014',
'label' => 'test term GO:0000014',
'namespace' => 'test_ontology',
'subsets' => [
$VAR1->{'link_ix'}{'ixN'}{'GO:0000001'}[0]{'node'}{'subsets'}[0]
],
'verbose' => 0
}, 'GOBO::TermNode' )
}, 'GOBO::LinkStatement' )
],
'GO:0000014' => [
bless( {
'node' => $VAR1->{'link_ix'}{'ixN'}{'GO:0000013'}[0]{'target'},
'relation' => bless( {
'anti_symmetric' => 1,
'id' => 'is_a',
'reflexive' => 1,
'transitive' => 1,
'verbose' => 0
}, 'GOBO::RelationNode' ),
'target' => $VAR1->{'link_ix'}{'ixN'}{'GO:0000010'}[0]{'target'}
}, 'GOBO::LinkStatement' )
],
'GO:0000015' => [
bless( {
'node' => $VAR1->{'link_ix'}{'ixN'}{'GO:0000004'}[1]{'target'},
'relation' => $VAR1->{'link_ix'}{'ixN'}{'GO:0000001'}[1]{'relation'},
'target' => $VAR1->{'link_ix'}{'ixN'}{'GO:0000013'}[0]{'target'}
}, 'GOBO::LinkStatement' )
],
'GO:0000016' => [
bless( {
'node' => $VAR1->{'link_ix'}{'ixN'}{'GO:0000004'}[2]{'target'},
'relation' => bless( {
'anti_symmetric' => 1,
'id' => 'is_a',
'reflexive' => 1,
'transitive' => 1,
'verbose' => 0
}, 'GOBO::RelationNode' ),
'target' => $VAR1->{'link_ix'}{'ixN'}{'GO:0000013'}[0]{'target'}
}, 'GOBO::LinkStatement' )
],
'GO:0000017' => [
bless( {
'node' => bless( {
'id' => 'GO:0000017',
'label' => 'test term GO:0000017',
'namespace' => 'test_ontology',
'verbose' => 0
}, 'GOBO::TermNode' ),
'relation' => bless( {
'anti_symmetric' => 1,
'id' => 'is_a',
'reflexive' => 1,
'transitive' => 1,
'verbose' => 0
}, 'GOBO::RelationNode' ),
'target' => bless( {
'id' => 'GO:0000019',
'label' => 'test_ontology',
'namespace' => 'test_ontology',
'subsets' => [
bless( {
'id' => 'goslim_generic',
'label' => 'Generic GO slim',
'verbose' => 0
}, 'GOBO::Subset' ),
bless( {
'id' => 'goslim_goa',
'label' => 'GOA and proteome slim',
'verbose' => 0
}, 'GOBO::Subset' ),
bless( {
'id' => 'goslim_pir',
'label' => 'PIR GO slim',
'verbose' => 0
}, 'GOBO::Subset' ),
bless( {
'id' => 'goslim_plant',
'label' => 'Plant GO slim',
'verbose' => 0
}, 'GOBO::Subset' )
],
'verbose' => 0
}, 'GOBO::TermNode' )
}, 'GOBO::LinkStatement' )
],
'GO:0000018' => [
bless( {
'node' => $VAR1->{'link_ix'}{'ixN'}{'GO:0000010'}[0]{'target'},
'relation' => bless( {
'anti_symmetric' => 1,
'id' => 'is_a',
'reflexive' => 1,
'transitive' => 1,
'verbose' => 0
}, 'GOBO::RelationNode' ),
'target' => $VAR1->{'link_ix'}{'ixN'}{'GO:0000017'}[0]{'target'}
}, 'GOBO::LinkStatement' )
],
'GO:0000021' => [
bless( {
'node' => bless( {
'id' => 'GO:0000021',
'label' => 'test term GO:0000021',
'namespace' => 'test_ontology',
'subsets' => [
$VAR1->{'link_ix'}{'ixN'}{'GO:0000001'}[0]{'node'}{'subsets'}[1]
],
'verbose' => 0
}, 'GOBO::TermNode' ),
'relation' => bless( {
'anti_symmetric' => 1,
'id' => 'is_a',
'reflexive' => 1,
'transitive' => 1,
'verbose' => 0
}, 'GOBO::RelationNode' ),
'target' => $VAR1->{'link_ix'}{'ixN'}{'GO:0000017'}[0]{'target'}
}, 'GOBO::LinkStatement' )
],
'GO:0000022' => [
bless( {
'node' => bless( {
'id' => 'GO:0000022',
'label' => 'test term GO:0000022',
'namespace' => 'test_ontology',
'verbose' => 0
}, 'GOBO::TermNode' ),
'relation' => bless( {
'anti_symmetric' => 1,
'id' => 'is_a',
'reflexive' => 1,
'transitive' => 1,
'verbose' => 0
}, 'GOBO::RelationNode' ),
'target' => $VAR1->{'link_ix'}{'ixN'}{'GO:0000021'}[0]{'node'}
}, 'GOBO::LinkStatement' )
],
'GO:0000023' => [
bless( {
'node' => bless( {
'id' => 'GO:0000023',
'label' => 'test term GO:0000023',
'namespace' => 'test_ontology',
'verbose' => 0
}, 'GOBO::TermNode' ),
'relation' => bless( {
'anti_symmetric' => 1,
'id' => 'is_a',
'reflexive' => 1,
'transitive' => 1,
'verbose' => 0
}, 'GOBO::RelationNode' ),
'target' => $VAR1->{'link_ix'}{'ixN'}{'GO:0000022'}[0]{'node'}
}, 'GOBO::LinkStatement' )
],
'GO:0000024' => [
bless( {
'node' => bless( {
'id' => 'GO:0000024',
'label' => 'test term GO:0000024',
'namespace' => 'test_ontology',
'subsets' => [
$VAR1->{'link_ix'}{'ixN'}{'GO:0000001'}[0]{'node'}{'subsets'}[0]
],
'verbose' => 0
}, 'GOBO::TermNode' ),
'relation' => bless( {
'anti_symmetric' => 1,
'id' => 'is_a',
'reflexive' => 1,
'transitive' => 1,
'verbose' => 0
}, 'GOBO::RelationNode' ),
'target' => $VAR1->{'link_ix'}{'ixN'}{'GO:0000023'}[0]{'node'}
}, 'GOBO::LinkStatement' ),
bless( {
'node' => $VAR1->{'link_ix'}{'ixN'}{'GO:0000024'}[0]{'node'},
'relation' => $VAR1->{'link_ix'}{'ixN'}{'GO:0000001'}[1]{'relation'},
'target' => bless( {
'id' => 'GO:0000025',
'label' => 'test term GO:0000025',
'namespace' => 'test_ontology',
'subsets' => [
$VAR1->{'link_ix'}{'ixN'}{'GO:0000001'}[0]{'node'}{'subsets'}[0]
],
'verbose' => 0
}, 'GOBO::TermNode' )
}, 'GOBO::LinkStatement' )
],
'GO:0000025' => [
bless( {
'node' => $VAR1->{'link_ix'}{'ixN'}{'GO:0000024'}[1]{'target'},
'relation' => $VAR1->{'link_ix'}{'ixN'}{'GO:0000001'}[1]{'relation'},
'target' => $VAR1->{'link_ix'}{'ixN'}{'GO:0000017'}[0]{'target'}
}, 'GOBO::LinkStatement' )
],
'negatively_regulates' => [
bless( {
'node' => $VAR1->{'link_ix'}{'ixN'}{'GO:0000004'}[2]{'relation'},
'relation' => bless( {
'anti_symmetric' => 1,
'id' => 'is_a',
'reflexive' => 1,
'transitive' => 1,
'verbose' => 0
}, 'GOBO::RelationNode' ),
'target' => $VAR1->{'link_ix'}{'ixN'}{'GO:0000001'}[2]{'relation'}
}, 'GOBO::LinkStatement' )
],
'positively_regulates' => [
bless( {
'node' => $VAR1->{'link_ix'}{'ixN'}{'GO:0000004'}[1]{'relation'},
'relation' => bless( {
'anti_symmetric' => 1,
'id' => 'is_a',
'reflexive' => 1,
'transitive' => 1,
'verbose' => 0
}, 'GOBO::RelationNode' ),
'target' => $VAR1->{'link_ix'}{'ixN'}{'GO:0000001'}[2]{'relation'}
}, 'GOBO::LinkStatement' )
]
},
'ixT' => {
'GO:0000006' => [
$VAR1->{'link_ix'}{'ixN'}{'GO:0000002'}[0]
],
'GO:0000007' => [
$VAR1->{'link_ix'}{'ixN'}{'GO:0000002'}[1],
$VAR1->{'link_ix'}{'ixN'}{'GO:0000003'}[0]
],
'GO:0000008' => [
$VAR1->{'link_ix'}{'ixN'}{'GO:0000001'}[0],
$VAR1->{'link_ix'}{'ixN'}{'GO:0000001'}[1],
$VAR1->{'link_ix'}{'ixN'}{'GO:0000001'}[2],
$VAR1->{'link_ix'}{'ixN'}{'GO:0000005'}[0]
],
'GO:0000009' => [
$VAR1->{'link_ix'}{'ixN'}{'GO:0000006'}[0]
],
'GO:0000010' => [
$VAR1->{'link_ix'}{'ixN'}{'GO:0000008'}[0],
$VAR1->{'link_ix'}{'ixN'}{'GO:0000009'}[0],
$VAR1->{'link_ix'}{'ixN'}{'GO:0000011'}[0]
],
'GO:0000011' => [
$VAR1->{'link_ix'}{'ixN'}{'GO:0000007'}[0]
],
'GO:0000012' => [
$VAR1->{'link_ix'}{'ixN'}{'GO:0000004'}[0]
],
'GO:0000013' => [
$VAR1->{'link_ix'}{'ixN'}{'GO:0000012'}[0]
],
'GO:0000014' => [
$VAR1->{'link_ix'}{'ixN'}{'GO:0000013'}[0],
$VAR1->{'link_ix'}{'ixN'}{'GO:0000015'}[0],
$VAR1->{'link_ix'}{'ixN'}{'GO:0000016'}[0]
],
'GO:0000015' => [
$VAR1->{'link_ix'}{'ixN'}{'GO:0000004'}[1]
],
'GO:0000016' => [
$VAR1->{'link_ix'}{'ixN'}{'GO:0000004'}[2]
],
'GO:0000018' => [
$VAR1->{'link_ix'}{'ixN'}{'GO:0000010'}[0],
$VAR1->{'link_ix'}{'ixN'}{'GO:0000014'}[0]
],
'GO:0000019' => [
$VAR1->{'link_ix'}{'ixN'}{'GO:0000017'}[0],
$VAR1->{'link_ix'}{'ixN'}{'GO:0000018'}[0],
$VAR1->{'link_ix'}{'ixN'}{'GO:0000021'}[0],
$VAR1->{'link_ix'}{'ixN'}{'GO:0000025'}[0]
],
'GO:0000021' => [
$VAR1->{'link_ix'}{'ixN'}{'GO:0000022'}[0]
],
'GO:0000022' => [
$VAR1->{'link_ix'}{'ixN'}{'GO:0000023'}[0]
],
'GO:0000023' => [
$VAR1->{'link_ix'}{'ixN'}{'GO:0000024'}[0]
],
'GO:0000025' => [
$VAR1->{'link_ix'}{'ixN'}{'GO:0000024'}[1]
],
'regulates' => [
$VAR1->{'link_ix'}{'ixN'}{'negatively_regulates'}[0],
$VAR1->{'link_ix'}{'ixN'}{'positively_regulates'}[0]
]
}
}, 'GOBO::Indexes::StatementIndex' ),
'node_index' => bless( {
'ixLabel' => {},
'ixN' => {
'GO:0000001' => $VAR1->{'link_ix'}{'ixN'}{'GO:0000001'}[0]{'node'},
'GO:0000002' => $VAR1->{'link_ix'}{'ixN'}{'GO:0000002'}[0]{'node'},
'GO:0000003' => $VAR1->{'link_ix'}{'ixN'}{'GO:0000003'}[0]{'node'},
'GO:0000004' => $VAR1->{'link_ix'}{'ixN'}{'GO:0000004'}[0]{'node'},
'GO:0000005' => $VAR1->{'link_ix'}{'ixN'}{'GO:0000005'}[0]{'node'},
'GO:0000006' => $VAR1->{'link_ix'}{'ixN'}{'GO:0000002'}[0]{'target'},
'GO:0000007' => $VAR1->{'link_ix'}{'ixN'}{'GO:0000002'}[1]{'target'},
'GO:0000008' => $VAR1->{'link_ix'}{'ixN'}{'GO:0000001'}[0]{'target'},
'GO:0000009' => $VAR1->{'link_ix'}{'ixN'}{'GO:0000006'}[0]{'target'},
'GO:0000010' => $VAR1->{'link_ix'}{'ixN'}{'GO:0000008'}[0]{'target'},
'GO:0000011' => $VAR1->{'link_ix'}{'ixN'}{'GO:0000007'}[0]{'target'},
'GO:0000012' => $VAR1->{'link_ix'}{'ixN'}{'GO:0000004'}[0]{'target'},
'GO:0000013' => $VAR1->{'link_ix'}{'ixN'}{'GO:0000012'}[0]{'target'},
'GO:0000014' => $VAR1->{'link_ix'}{'ixN'}{'GO:0000013'}[0]{'target'},
'GO:0000015' => $VAR1->{'link_ix'}{'ixN'}{'GO:0000004'}[1]{'target'},
'GO:0000016' => $VAR1->{'link_ix'}{'ixN'}{'GO:0000004'}[2]{'target'},
'GO:0000017' => $VAR1->{'link_ix'}{'ixN'}{'GO:0000017'}[0]{'node'},
'GO:0000018' => $VAR1->{'link_ix'}{'ixN'}{'GO:0000010'}[0]{'target'},
'GO:0000019' => $VAR1->{'link_ix'}{'ixN'}{'GO:0000017'}[0]{'target'},
'GO:0000020' => bless( {
'id' => 'GO:0000020',
'label' => 'test term GO:0000020',
'namespace' => 'test_ontology',
'obsolete' => 1,
'subsets' => [
$VAR1->{'link_ix'}{'ixN'}{'GO:0000001'}[0]{'node'}{'subsets'}[0]
],
'verbose' => 0
}, 'GOBO::TermNode' ),
'GO:0000021' => $VAR1->{'link_ix'}{'ixN'}{'GO:0000021'}[0]{'node'},
'GO:0000022' => $VAR1->{'link_ix'}{'ixN'}{'GO:0000022'}[0]{'node'},
'GO:0000023' => $VAR1->{'link_ix'}{'ixN'}{'GO:0000023'}[0]{'node'},
'GO:0000024' => $VAR1->{'link_ix'}{'ixN'}{'GO:0000024'}[0]{'node'},
'GO:0000025' => $VAR1->{'link_ix'}{'ixN'}{'GO:0000024'}[1]{'target'},
'negatively_regulates' => $VAR1->{'link_ix'}{'ixN'}{'GO:0000004'}[2]{'relation'},
'part_of' => $VAR1->{'link_ix'}{'ixN'}{'GO:0000001'}[1]{'relation'},
'positively_regulates' => $VAR1->{'link_ix'}{'ixN'}{'GO:0000004'}[1]{'relation'},
'regulates' => $VAR1->{'link_ix'}{'ixN'}{'GO:0000001'}[2]{'relation'}
}
}, 'GOBO::Indexes::NodeIndex' ),
'property_value_map' => {
'auto-generated-by' => 'OBO-Edit 2.0',
'synonymtypedef' => 'systematic_synonym "Systematic synonym" EXACT'
},
'relation_h' => {
'negatively_regulates' => $VAR1->{'link_ix'}{'ixN'}{'GO:0000004'}[2]{'relation'},
'part_of' => $VAR1->{'link_ix'}{'ixN'}{'GO:0000001'}[1]{'relation'},
'positively_regulates' => $VAR1->{'link_ix'}{'ixN'}{'GO:0000004'}[1]{'relation'},
'regulates' => $VAR1->{'link_ix'}{'ixN'}{'GO:0000001'}[2]{'relation'}
},
'subset_index' => {
'goslim_candida' => bless( {
'id' => 'goslim_candida',
'label' => 'Candida GO slim',
'verbose' => 0
}, 'GOBO::Subset' ),
'goslim_generic' => $VAR1->{'link_ix'}{'ixN'}{'GO:0000017'}[0]{'target'}{'subsets'}[0],
'goslim_goa' => $VAR1->{'link_ix'}{'ixN'}{'GO:0000017'}[0]{'target'}{'subsets'}[1],
'goslim_pir' => $VAR1->{'link_ix'}{'ixN'}{'GO:0000017'}[0]{'target'}{'subsets'}[2],
'goslim_plant' => $VAR1->{'link_ix'}{'ixN'}{'GO:0000017'}[0]{'target'}{'subsets'}[3],
'gosubset_prok' => bless( {
'id' => 'gosubset_prok',
'label' => 'Prokaryotic GO subset',
'verbose' => 0
}, 'GOBO::Subset' ),
'test_goslim' => $VAR1->{'link_ix'}{'ixN'}{'GO:0000001'}[0]{'node'}{'subsets'}[0],
'test_next_goslim' => $VAR1->{'link_ix'}{'ixN'}{'GO:0000001'}[0]{'node'}{'subsets'}[1]
},
'term_h' => {
'GO:0000001' => $VAR1->{'link_ix'}{'ixN'}{'GO:0000001'}[0]{'node'},
'GO:0000002' => $VAR1->{'link_ix'}{'ixN'}{'GO:0000002'}[0]{'node'},
'GO:0000003' => $VAR1->{'link_ix'}{'ixN'}{'GO:0000003'}[0]{'node'},
'GO:0000004' => $VAR1->{'link_ix'}{'ixN'}{'GO:0000004'}[0]{'node'},
'GO:0000005' => $VAR1->{'link_ix'}{'ixN'}{'GO:0000005'}[0]{'node'},
'GO:0000006' => $VAR1->{'link_ix'}{'ixN'}{'GO:0000002'}[0]{'target'},
'GO:0000007' => $VAR1->{'link_ix'}{'ixN'}{'GO:0000002'}[1]{'target'},
'GO:0000008' => $VAR1->{'link_ix'}{'ixN'}{'GO:0000001'}[0]{'target'},
'GO:0000009' => $VAR1->{'link_ix'}{'ixN'}{'GO:0000006'}[0]{'target'},
'GO:0000010' => $VAR1->{'link_ix'}{'ixN'}{'GO:0000008'}[0]{'target'},
'GO:0000011' => $VAR1->{'link_ix'}{'ixN'}{'GO:0000007'}[0]{'target'},
'GO:0000012' => $VAR1->{'link_ix'}{'ixN'}{'GO:0000004'}[0]{'target'},
'GO:0000013' => $VAR1->{'link_ix'}{'ixN'}{'GO:0000012'}[0]{'target'},
'GO:0000014' => $VAR1->{'link_ix'}{'ixN'}{'GO:0000013'}[0]{'target'},
'GO:0000015' => $VAR1->{'link_ix'}{'ixN'}{'GO:0000004'}[1]{'target'},
'GO:0000016' => $VAR1->{'link_ix'}{'ixN'}{'GO:0000004'}[2]{'target'},
'GO:0000017' => $VAR1->{'link_ix'}{'ixN'}{'GO:0000017'}[0]{'node'},
'GO:0000018' => $VAR1->{'link_ix'}{'ixN'}{'GO:0000010'}[0]{'target'},
'GO:0000019' => $VAR1->{'link_ix'}{'ixN'}{'GO:0000017'}[0]{'target'},
'GO:0000020' => $VAR1->{'node_index'}{'ixN'}{'GO:0000020'},
'GO:0000021' => $VAR1->{'link_ix'}{'ixN'}{'GO:0000021'}[0]{'node'},
'GO:0000022' => $VAR1->{'link_ix'}{'ixN'}{'GO:0000022'}[0]{'node'},
'GO:0000023' => $VAR1->{'link_ix'}{'ixN'}{'GO:0000023'}[0]{'node'},
'GO:0000024' => $VAR1->{'link_ix'}{'ixN'}{'GO:0000024'}[0]{'node'},
'GO:0000025' => $VAR1->{'link_ix'}{'ixN'}{'GO:0000024'}[1]{'target'}
}
}, 'GOBO::Graph' );
t/graph_creation.t ........... ok
t/inference_engine_test.t .... ok
t/logical_definition_test.t .. ok
t/node_removal.t ............. ok
t/oboparsertest.t ............ ok
Subroutine main::ok redefined at t/parsetest.t line 6
Prototype mismatch: sub main::ok ($;$$) vs ($;$) at t/parsetest.t line 6
Subroutine main::skip redefined at t/parsetest.t line 6
Prototype mismatch: sub main::skip ($;$$$) vs none at t/parsetest.t line 6
Subroutine main::plan redefined at t/parsetest.t line 6
You are overwriting a locally defined method (get_header_check_sub) with an accessor at C:/home/stro/perl/perl5132/site/lib/Moose/Meta/Attribute.pm line 570
Moose::Meta::Attribute::_process_accessors('Moose::Meta::Attribute=HASH(0x1ad8adc)', 'reader', 'get_header_check_sub', undef) called at C:/home/stro/perl/perl5132/site/lib/Class/MOP/Attribute.pm line 358
Class::MOP::Attribute::install_accessors('Moose::Meta::Attribute=HASH(0x1ad8adc)') called at C:/home/stro/perl/perl5132/site/lib/Moose/Meta/Attribute.pm line 544
Moose::Meta::Attribute::install_accessors('Moose::Meta::Attribute=HASH(0x1ad8adc)') called at C:/home/stro/perl/perl5132/site/lib/Class/MOP/Class.pm line 717
Class::MOP::Class::__ANON__() called at C:/home/stro/perl/perl5132/site/lib/Try/Tiny.pm line 76
eval {...} called at C:/home/stro/perl/perl5132/site/lib/Try/Tiny.pm line 67
Try::Tiny::try('CODE(0x1ad1334)', 'Try::Tiny::Catch=REF(0x18387fc)') called at C:/home/stro/perl/perl5132/site/lib/Class/MOP/Class.pm line 722
Class::MOP::Class::_post_add_attribute('Moose::Meta::Class=HASH(0x183928c)', 'Moose::Meta::Attribute=HASH(0x1ad8adc)') called at C:/home/stro/perl/perl5132/site/lib/Class/MOP/Mixin/HasAttributes.pm line 45
Class::MOP::Mixin::HasAttributes::add_attribute('Moose::Meta::Class=HASH(0x183928c)', 'Moose::Meta::Attribute=HASH(0x1ad8adc)') called at C:/home/stro/perl/perl5132/site/lib/Moose/Meta/Class.pm line 304
Moose::Meta::Class::add_attribute('Moose::Meta::Class=HASH(0x183928c)', 'header_check_sub', 'reader', 'get_header_check_sub', 'default', 'CODE(0x1a7cc1c)', 'is', 'rw', 'writer', ...) called at C:/home/stro/perl/perl5132/site/lib/Moose.pm line 69
Moose::has('Moose::Meta::Class=HASH(0x183928c)', 'header_check_sub', 'is', 'rw', 'isa', 'CodeRef', 'writer', 'set_header_check_sub', 'reader', ...) called at C:/home/stro/perl/perl5132/site/lib/Moose/Exporter.pm line 293
Moose::has('header_check_sub', 'is', 'rw', 'isa', 'CodeRef', 'writer', 'set_header_check_sub', 'reader', 'get_header_check_sub', ...) called at C:\home\stro\cpan\build\5.13.2\GOBO-0.03-gAyQAw\blib\lib/GOBO/Parsers/OBOParserDispatchHash.pm line 20
require GOBO/Parsers/OBOParserDispatchHash.pm called at t/parsetest.t line 12
main::BEGIN() called at C:\home\stro\cpan\build\5.13.2\GOBO-0.03-gAyQAw\blib\lib/GOBO/Parsers/OBOParserDispatchHash.pm line 0
eval {...} called at C:\home\stro\cpan\build\5.13.2\GOBO-0.03-gAyQAw\blib\lib/GOBO/Parsers/OBOParserDispatchHash.pm line 0
You are overwriting a locally defined method (get_stanza_check_sub) with an accessor at C:/home/stro/perl/perl5132/site/lib/Moose/Meta/Attribute.pm line 570
Moose::Meta::Attribute::_process_accessors('Moose::Meta::Attribute=HASH(0x1ae194c)', 'reader', 'get_stanza_check_sub', undef) called at C:/home/stro/perl/perl5132/site/lib/Class/MOP/Attribute.pm line 358
Class::MOP::Attribute::install_accessors('Moose::Meta::Attribute=HASH(0x1ae194c)') called at C:/home/stro/perl/perl5132/site/lib/Moose/Meta/Attribute.pm line 544
Moose::Meta::Attribute::install_accessors('Moose::Meta::Attribute=HASH(0x1ae194c)') called at C:/home/stro/perl/perl5132/site/lib/Class/MOP/Class.pm line 717
Class::MOP::Class::__ANON__() called at C:/home/stro/perl/perl5132/site/lib/Try/Tiny.pm line 76
eval {...} called at C:/home/stro/perl/perl5132/site/lib/Try/Tiny.pm line 67
Try::Tiny::try('CODE(0x1ad8d2c)', 'Try::Tiny::Catch=REF(0x1ad2654)') called at C:/home/stro/perl/perl5132/site/lib/Class/MOP/Class.pm line 722
Class::MOP::Class::_post_add_attribute('Moose::Meta::Class=HASH(0x183928c)', 'Moose::Meta::Attribute=HASH(0x1ae194c)') called at C:/home/stro/perl/perl5132/site/lib/Class/MOP/Mixin/HasAttributes.pm line 45
Class::MOP::Mixin::HasAttributes::add_attribute('Moose::Meta::Class=HASH(0x183928c)', 'Moose::Meta::Attribute=HASH(0x1ae194c)') called at C:/home/stro/perl/perl5132/site/lib/Moose/Meta/Class.pm line 304
Moose::Meta::Class::add_attribute('Moose::Meta::Class=HASH(0x183928c)', 'stanza_check_sub', 'reader', 'get_stanza_check_sub', 'default', 'CODE(0x1a6fcfc)', 'is', 'rw', 'writer', ...) called at C:/home/stro/perl/perl5132/site/lib/Moose.pm line 69
Moose::has('Moose::Meta::Class=HASH(0x183928c)', 'stanza_check_sub', 'is', 'rw', 'isa', 'CodeRef', 'writer', 'set_stanza_check_sub', 'reader', ...) called at C:/home/stro/perl/perl5132/site/lib/Moose/Exporter.pm line 293
Moose::has('stanza_check_sub', 'is', 'rw', 'isa', 'CodeRef', 'writer', 'set_stanza_check_sub', 'reader', 'get_stanza_check_sub', ...) called at C:\home\stro\cpan\build\5.13.2\GOBO-0.03-gAyQAw\blib\lib/GOBO/Parsers/OBOParserDispatchHash.pm line 21
require GOBO/Parsers/OBOParserDispatchHash.pm called at t/parsetest.t line 12
main::BEGIN() called at C:\home\stro\cpan\build\5.13.2\GOBO-0.03-gAyQAw\blib\lib/GOBO/Parsers/OBOParserDispatchHash.pm line 0
eval {...} called at C:\home\stro\cpan\build\5.13.2\GOBO-0.03-gAyQAw\blib\lib/GOBO/Parsers/OBOParserDispatchHash.pm line 0
You are overwriting a locally defined method (get_tag_check_sub) with an accessor at C:/home/stro/perl/perl5132/site/lib/Moose/Meta/Attribute.pm line 570
Moose::Meta::Attribute::_process_accessors('Moose::Meta::Attribute=HASH(0x1ae22bc)', 'reader', 'get_tag_check_sub', undef) called at C:/home/stro/perl/perl5132/site/lib/Class/MOP/Attribute.pm line 358
Class::MOP::Attribute::install_accessors('Moose::Meta::Attribute=HASH(0x1ae22bc)') called at C:/home/stro/perl/perl5132/site/lib/Moose/Meta/Attribute.pm line 544
Moose::Meta::Attribute::install_accessors('Moose::Meta::Attribute=HASH(0x1ae22bc)') called at C:/home/stro/perl/perl5132/site/lib/Class/MOP/Class.pm line 717
Class::MOP::Class::__ANON__() called at C:/home/stro/perl/perl5132/site/lib/Try/Tiny.pm line 76
eval {...} called at C:/home/stro/perl/perl5132/site/lib/Try/Tiny.pm line 67
Try::Tiny::try('CODE(0x1ae9384)', 'Try::Tiny::Catch=REF(0x1a7c2dc)') called at C:/home/stro/perl/perl5132/site/lib/Class/MOP/Class.pm line 722
Class::MOP::Class::_post_add_attribute('Moose::Meta::Class=HASH(0x183928c)', 'Moose::Meta::Attribute=HASH(0x1ae22bc)') called at C:/home/stro/perl/perl5132/site/lib/Class/MOP/Mixin/HasAttributes.pm line 45
Class::MOP::Mixin::HasAttributes::add_attribute('Moose::Meta::Class=HASH(0x183928c)', 'Moose::Meta::Attribute=HASH(0x1ae22bc)') called at C:/home/stro/perl/perl5132/site/lib/Moose/Meta/Class.pm line 304
Moose::Meta::Class::add_attribute('Moose::Meta::Class=HASH(0x183928c)', 'tag_check_sub', 'reader', 'get_tag_check_sub', 'default', 'CODE(0x1a7ca1c)', 'is', 'rw', 'writer', ...) called at C:/home/stro/perl/perl5132/site/lib/Moose.pm line 69
Moose::has('Moose::Meta::Class=HASH(0x183928c)', 'tag_check_sub', 'is', 'rw', 'isa', 'CodeRef', 'writer', 'set_tag_check_sub', 'reader', ...) called at C:/home/stro/perl/perl5132/site/lib/Moose/Exporter.pm line 293
Moose::has('tag_check_sub', 'is', 'rw', 'isa', 'CodeRef', 'writer', 'set_tag_check_sub', 'reader', 'get_tag_check_sub', ...) called at C:\home\stro\cpan\build\5.13.2\GOBO-0.03-gAyQAw\blib\lib/GOBO/Parsers/OBOParserDispatchHash.pm line 22
require GOBO/Parsers/OBOParserDispatchHash.pm called at t/parsetest.t line 12
main::BEGIN() called at C:\home\stro\cpan\build\5.13.2\GOBO-0.03-gAyQAw\blib\lib/GOBO/Parsers/OBOParserDispatchHash.pm line 0
eval {...} called at C:\home\stro\cpan\build\5.13.2\GOBO-0.03-gAyQAw\blib\lib/GOBO/Parsers/OBOParserDispatchHash.pm line 0
t/parsetest.t ................ ok
t/relation_test.t ............ ok
Reference found where even-sized list expected at C:\home\stro\cpan\build\5.13.2\GOBO-0.03-gAyQAw\blib\lib/GOBO/Writers/Writer.pm line 55, <GEN0> line 130.
t/roundtrip.t ................ ok
The system cannot find the path specified.
# Failed test 'Checking go-slimdown.pl with invalid input'
# at t/slimmer_test.t line 19.
# ''
# doesn't match '(?-xism:Error: )'
The system cannot find the path specified.
# Failed test 'Checking go-slimdown.pl with no output'
# at t/slimmer_test.t line 23.
# ''
# doesn't match '(?-xism:Error: )'
The system cannot find the path specified.
# Failed test 'Checking go-slimdown.pl with no slim'
# at t/slimmer_test.t line 27.
# ''
# doesn't match '(?-xism:Error: )'
The system cannot find the path specified.
# Failed test 'Checking go-slimdown.pl with incorrectly specified output'
# at t/slimmer_test.t line 31.
# ''
# doesn't match '(?-xism:Error: )'
The system cannot find the path specified.
# Failed test 'Checking go-slimdown.pl with invalid subset'
# at t/slimmer_test.t line 37.
# ''
# doesn't match '(?-xism:Error: )'
Couldn't load class (GOBO::Node) because: Couldn't load class (GOBO::Labeled) because: Couldn't load class (GOBO::Attributed) because: Can't locate DateTime/Format/ISO8601.pm in @INC (@INC contains: C:\home\stro\cpan\build\5.13.2\GOBO-0.03-gAyQAw\blib\lib C:\home\stro\cpan\build\5.13.2\GOBO-0.03-gAyQAw\blib\arch C:/bin/dev/perl/site/lib C:/bin/dev/perl/lib .) at C:\home\stro\cpan\build\5.13.2\GOBO-0.03-gAyQAw\blib\lib/GOBO/Attributed.pm line 18.
BEGIN failed--compilation aborted at C:\home\stro\cpan\build\5.13.2\GOBO-0.03-gAyQAw\blib\lib/GOBO/Attributed.pm line 18.
Compilation failed in require at C:/bin/dev/perl/site/lib/Class/MOP.pm line 114.
at C:/bin/dev/perl/site/lib/Class/MOP.pm line 120
Class::MOP::__ANON__('Can\'t locate DateTime/Format/ISO8601.pm in @INC (@INC contai...') called at C:/bin/dev/perl/site/lib/Try/Tiny.pm line 98
Try::Tiny::try('CODE(0x21219ac)', 'Try::Tiny::Catch=REF(0x1f92734)') called at C:/bin/dev/perl/site/lib/Class/MOP.pm line 125
Class::MOP::load_first_existing_class('GOBO::Attributed') called at C:/bin/dev/perl/site/lib/Class/MOP.pm line 137
Class::MOP::load_class('GOBO::Attributed', undef) called at C:/bin/dev/perl/site/lib/Moose/Util.pm line 108
Moose::Util::_apply_all_roles('Moose::Meta::Class=HASH(0x21142d4)', undef, 'GOBO::Attributed') called at C:/bin/dev/perl/site/lib/Moose/Util.pm line 86
Moose::Util::apply_all_roles('Moose::Meta::Class=HASH(0x21142d4)', 'GOBO::Attributed') called at C:/bin/dev/perl/site/lib/Moose.pm line 57
Moose::with('Moose::Meta::Class=HASH(0x21142d4)', 'GOBO::Attributed') called at C:/bin/dev/perl/site/lib/Moose/Exporter.pm line 293
Moose::with('GOBO::Attributed') called at C:\home\stro\cpan\build\5.13.2\GOBO-0.03-gAyQAw\blib\lib/GOBO/Synonym.pm line 17
require GOBO/Synonym.pm called at C:\home\stro\cpan\build\5.13.2\GOBO-0.03-gAyQAw\blib\lib/GOBO/Labeled.pm line 23
GOBO::Labeled::BEGIN() called at C:\home\stro\cpan\build\5.13.2\GOBO-0.03-gAyQAw\blib\lib/GOBO/Synonym.pm line 0
eval {...} called at C:\home\stro\cpan\build\5.13.2\GOBO-0.03-gAyQAw\blib\lib/GOBO/Synonym.pm line 0
require GOBO/Labeled.pm called at C:/bin/dev/perl/site/lib/Class/MOP.pm line 114
Class::MOP::__ANON__() called at C:/bin/dev/perl/site/lib/Try/Tiny.pm line 71
eval {...} called at C:/bin/dev/perl/site/lib/Try/Tiny.pm line 67
Try::Tiny::try('CODE(0x20d07cc)', 'Try::Tiny::Catch=REF(0x20f9dcc)') called at C:/bin/dev/perl/site/lib/Class/MOP.pm line 125
Class::MOP::load_first_existing_class('GOBO::Labeled') called at C:/bin/dev/perl/site/lib/Class/MOP.pm line 137
Class::MOP::load_class('GOBO::Labeled', undef) called at C:/bin/dev/perl/site/lib/Moose/Util.pm line 108
Moose::Util::_apply_all_roles('Moose::Meta::Class=HASH(0x20c00a4)', undef, 'GOBO::Labeled') called at C:/bin/dev/perl/site/lib/Moose/Util.pm line 86
Moose::Util::apply_all_roles('Moose::Meta::Class=HASH(0x20c00a4)', 'GOBO::Labeled') called at C:/bin/dev/perl/site/lib/Moose.pm line 57
Moose::with('Moose::Meta::Class=HASH(0x20c00a4)', 'GOBO::Labeled') called at C:/bin/dev/perl/site/lib/Moose/Exporter.pm line 293
Moose::with('GOBO::Labeled') called at C:\home\stro\cpan\build\5.13.2\GOBO-0.03-gAyQAw\blib\lib/GOBO/Node.pm line 6
require GOBO/Node.pm called at C:/bin/dev/perl/site/lib/Class/MOP.pm line 114
Class::MOP::__ANON__() called at C:/bin/dev/perl/site/lib/Try/Tiny.pm line 71
eval {...} called at C:/bin/dev/perl/site/lib/Try/Tiny.pm line 67
Try::Tiny::try('CODE(0x20b771c)', 'Try::Tiny::Catch=REF(0x20a70a4)') called at C:/bin/dev/perl/site/lib/Class/MOP.pm line 125
Class::MOP::load_first_existing_class('GOBO::Node') called at C:/bin/dev/perl/site/lib/Class/MOP.pm line 137
Class::MOP::load_class('GOBO::Node', undef) called at C:/bin/dev/perl/site/lib/Moose/Meta/Class.pm line 286
Moose::Meta::Class::superclasses(undef, 'GOBO::Node') called at C:/bin/dev/perl/site/lib/Moose.pm line 53
Moose::extends('Moose::Meta::Class=HASH(0x20067fc)', 'GOBO::Node') called at C:/bin/dev/perl/site/lib/Moose/Exporter.pm line 293
Moose::extends('GOBO::Node') called at C:\home\stro\cpan\build\5.13.2\GOBO-0.03-gAyQAw\blib\lib/GOBO/Evidence.pm line 4
require GOBO/Evidence.pm called at C:\home\stro\cpan\build\5.13.2\GOBO-0.03-gAyQAw\blib\lib/GOBO/Annotation.pm line 5
GOBO::Annotation::BEGIN() called at C:\home\stro\cpan\build\5.13.2\GOBO-0.03-gAyQAw\blib\lib/GOBO/Synonym.pm line 0
eval {...} called at C:\home\stro\cpan\build\5.13.2\GOBO-0.03-gAyQAw\blib\lib/GOBO/Synonym.pm line 0
require GOBO/Annotation.pm called at C:\home\stro\cpan\build\5.13.2\GOBO-0.03-gAyQAw\blib\lib/GOBO/Graph.pm line 55
GOBO::Graph::BEGIN() called at C:\home\stro\cpan\build\5.13.2\GOBO-0.03-gAyQAw\blib\lib/GOBO/Synonym.pm line 0
eval {...} called at C:\home\stro\cpan\build\5.13.2\GOBO-0.03-gAyQAw\blib\lib/GOBO/Synonym.pm line 0
require GOBO/Graph.pm called at bin/go-slimdown.pl line 10
main::BEGIN() called at C:\home\stro\cpan\build\5.13.2\GOBO-0.03-gAyQAw\blib\lib/GOBO/Synonym.pm line 0
eval {...} called at C:\home\stro\cpan\build\5.13.2\GOBO-0.03-gAyQAw\blib\lib/GOBO/Synonym.pm line 0
Compilation failed in require at C:\home\stro\cpan\build\5.13.2\GOBO-0.03-gAyQAw\blib\lib/GOBO/Labeled.pm line 23.
BEGIN failed--compilation aborted at C:\home\stro\cpan\build\5.13.2\GOBO-0.03-gAyQAw\blib\lib/GOBO/Labeled.pm line 23.
Compilation failed in require at C:/bin/dev/perl/site/lib/Class/MOP.pm line 114.
at C:/bin/dev/perl/site/lib/Class/MOP.pm line 120
Class::MOP::__ANON__('Couldn\'t load class (GOBO::Attributed) because: Can\'t locat...') called at C:/bin/dev/perl/site/lib/Try/Tiny.pm line 98
Try::Tiny::try('CODE(0x20d07cc)', 'Try::Tiny::Catch=REF(0x20f9dcc)') called at C:/bin/dev/perl/site/lib/Class/MOP.pm line 125
Class::MOP::load_first_existing_class('GOBO::Labeled') called at C:/bin/dev/perl/site/lib/Class/MOP.pm line 137
Class::MOP::load_class('GOBO::Labeled', undef) called at C:/bin/dev/perl/site/lib/Moose/Util.pm line 108
Moose::Util::_apply_all_roles('Moose::Meta::Class=HASH(0x20c00a4)', undef, 'GOBO::Labeled') called at C:/bin/dev/perl/site/lib/Moose/Util.pm line 86
Moose::Util::apply_all_roles('Moose::Meta::Class=HASH(0x20c00a4)', 'GOBO::Labeled') called at C:/bin/dev/perl/site/lib/Moose.pm line 57
Moose::with('Moose::Meta::Class=HASH(0x20c00a4)', 'GOBO::Labeled') called at C:/bin/dev/perl/site/lib/Moose/Exporter.pm line 293
Moose::with('GOBO::Labeled') called at C:\home\stro\cpan\build\5.13.2\GOBO-0.03-gAyQAw\blib\lib/GOBO/Node.pm line 6
require GOBO/Node.pm called at C:/bin/dev/perl/site/lib/Class/MOP.pm line 114
Class::MOP::__ANON__() called at C:/bin/dev/perl/site/lib/Try/Tiny.pm line 71
eval {...} called at C:/bin/dev/perl/site/lib/Try/Tiny.pm line 67
Try::Tiny::try('CODE(0x20b771c)', 'Try::Tiny::Catch=REF(0x20a70a4)') called at C:/bin/dev/perl/site/lib/Class/MOP.pm line 125
Class::MOP::load_first_existing_class('GOBO::Node') called at C:/bin/dev/perl/site/lib/Class/MOP.pm line 137
Class::MOP::load_class('GOBO::Node', undef) called at C:/bin/dev/perl/site/lib/Moose/Meta/Class.pm line 286
Moose::Meta::Class::superclasses(undef, 'GOBO::Node') called at C:/bin/dev/perl/site/lib/Moose.pm line 53
Moose::extends('Moose::Meta::Class=HASH(0x20067fc)', 'GOBO::Node') called at C:/bin/dev/perl/site/lib/Moose/Exporter.pm line 293
Moose::extends('GOBO::Node') called at C:\home\stro\cpan\build\5.13.2\GOBO-0.03-gAyQAw\blib\lib/GOBO/Evidence.pm line 4
require GOBO/Evidence.pm called at C:\home\stro\cpan\build\5.13.2\GOBO-0.03-gAyQAw\blib\lib/GOBO/Annotation.pm line 5
GOBO::Annotation::BEGIN() called at C:\home\stro\cpan\build\5.13.2\GOBO-0.03-gAyQAw\blib\lib/GOBO/Node.pm line 0
eval {...} called at C:\home\stro\cpan\build\5.13.2\GOBO-0.03-gAyQAw\blib\lib/GOBO/Node.pm line 0
require GOBO/Annotation.pm called at C:\home\stro\cpan\build\5.13.2\GOBO-0.03-gAyQAw\blib\lib/GOBO/Graph.pm line 55
GOBO::Graph::BEGIN() called at C:\home\stro\cpan\build\5.13.2\GOBO-0.03-gAyQAw\blib\lib/GOBO/Node.pm line 0
eval {...} called at C:\home\stro\cpan\build\5.13.2\GOBO-0.03-gAyQAw\blib\lib/GOBO/Node.pm line 0
require GOBO/Graph.pm called at bin/go-slimdown.pl line 10
main::BEGIN() called at C:\home\stro\cpan\build\5.13.2\GOBO-0.03-gAyQAw\blib\lib/GOBO/Node.pm line 0
eval {...} called at C:\home\stro\cpan\build\5.13.2\GOBO-0.03-gAyQAw\blib\lib/GOBO/Node.pm line 0
Compilation failed in require at C:/bin/dev/perl/site/lib/Class/MOP.pm line 114.
at C:/bin/dev/perl/site/lib/Class/MOP.pm line 120
Class::MOP::__ANON__('Couldn\'t load class (GOBO::Labeled) because: Couldn\'t load ...') called at C:/bin/dev/perl/site/lib/Try/Tiny.pm line 98
Try::Tiny::try('CODE(0x20b771c)', 'Try::Tiny::Catch=REF(0x20a70a4)') called at C:/bin/dev/perl/site/lib/Class/MOP.pm line 125
Class::MOP::load_first_existing_class('GOBO::Node') called at C:/bin/dev/perl/site/lib/Class/MOP.pm line 137
Class::MOP::load_class('GOBO::Node', undef) called at C:/bin/dev/perl/site/lib/Moose/Meta/Class.pm line 286
Moose::Meta::Class::superclasses(undef, 'GOBO::Node') called at C:/bin/dev/perl/site/lib/Moose.pm line 53
Moose::extends('Moose::Meta::Class=HASH(0x20067fc)', 'GOBO::Node') called at C:/bin/dev/perl/site/lib/Moose/Exporter.pm line 293
Moose::extends('GOBO::Node') called at C:\home\stro\cpan\build\5.13.2\GOBO-0.03-gAyQAw\blib\lib/GOBO/Evidence.pm line 4
require GOBO/Evidence.pm called at C:\home\stro\cpan\build\5.13.2\GOBO-0.03-gAyQAw\blib\lib/GOBO/Annotation.pm line 5
GOBO::Annotation::BEGIN() called at C:\home\stro\cpan\build\5.13.2\GOBO-0.03-gAyQAw\blib\lib/GOBO/Evidence.pm line 0
eval {...} called at C:\home\stro\cpan\build\5.13.2\GOBO-0.03-gAyQAw\blib\lib/GOBO/Evidence.pm line 0
require GOBO/Annotation.pm called at C:\home\stro\cpan\build\5.13.2\GOBO-0.03-gAyQAw\blib\lib/GOBO/Graph.pm line 55
GOBO::Graph::BEGIN() called at C:\home\stro\cpan\build\5.13.2\GOBO-0.03-gAyQAw\blib\lib/GOBO/Evidence.pm line 0
eval {...} called at C:\home\stro\cpan\build\5.13.2\GOBO-0.03-gAyQAw\blib\lib/GOBO/Evidence.pm line 0
require GOBO/Graph.pm called at bin/go-slimdown.pl line 10
main::BEGIN() called at C:\home\stro\cpan\build\5.13.2\GOBO-0.03-gAyQAw\blib\lib/GOBO/Evidence.pm line 0
eval {...} called at C:\home\stro\cpan\build\5.13.2\GOBO-0.03-gAyQAw\blib\lib/GOBO/Evidence.pm line 0
Compilation failed in require at C:\home\stro\cpan\build\5.13.2\GOBO-0.03-gAyQAw\blib\lib/GOBO/Annotation.pm line 5.
BEGIN failed--compilation aborted at C:\home\stro\cpan\build\5.13.2\GOBO-0.03-gAyQAw\blib\lib/GOBO/Annotation.pm line 5.
Compilation failed in require at C:\home\stro\cpan\build\5.13.2\GOBO-0.03-gAyQAw\blib\lib/GOBO/Graph.pm line 55.
BEGIN failed--compilation aborted at C:\home\stro\cpan\build\5.13.2\GOBO-0.03-gAyQAw\blib\lib/GOBO/Graph.pm line 55.
Compilation failed in require at bin/go-slimdown.pl line 10.
BEGIN failed--compilation aborted at bin/go-slimdown.pl line 10.
# Failed test 'Checking go-slimdown.pl with valid args'
# at t/slimmer_test.t line 41.
go-slimdown.pl exited funny: 512 at t/slimmer_test.t line 43.
# Looks like you planned 44 tests but ran 6.
# Looks like you failed 6 tests of 6
[Output truncated after 50K]
------------------------------
PREREQUISITES
------------------------------
Prerequisite modules loaded:
requires:
Module Need Have
------------------------- ---- -----
DateTime::Format::ISO8601 0 0.07
List::MoreUtils 0 0.22
Moose 0.81 1.08
Test::Deep 0 0.106
configure_requires:
Module Need Have
------------------------- ---- -----
ExtUtils::MakeMaker 0 6.56
------------------------------
ENVIRONMENT AND OTHER CONTEXT
------------------------------
Environment variables:
ACTIVEPERL_CONFIG_SILENT = 1
AUTOMATED_TESTING = 1
COMSPEC = C:\WINDOWS\system32\cmd.exe
NUMBER_OF_PROCESSORS = 2
PATH = C:\bin\apps\far\;C:\bin\dev\python\;C:\bin\dev\svn;C:\Program Files\Common Files\Microsoft Shared\Windows Live;C:\bin\dev\perl\site\bin;C:\bin\dev\perl\bin;C:\WINDOWS\system32;C:\WINDOWS;C:\WINDOWS\System32\Wbem;C:\WINDOWS\system32\WindowsPowerShell\v1.0;C:\bin\arc;C:\bin\dev\TortoiseSVN\bin;C:\bin\dev\Mercurial;C:\bin\dev\TortoiseHg;c:\bin\sys\gnuwin32\bin;C:\bin\dev\oracle\instantclient_11_1;C:\Program Files\MySQL\MySQL Server 5.1\bin;C:\Program Files\Common Files\Microsoft Shared\Windows Live
PERL5LIB =
PERL5OPT =
PERL5_CPANPLUS_IS_RUNNING = 3864
PERL5_CPAN_IS_RUNNING = 3864
PERL5_CPAN_IS_RUNNING_IN_RECURSION = 4872,3864
PERL_CR_SMOKER_CURRENT = GOBO-0.03
PERL_EXTUTILS_AUTOINSTALL = --defaultdeps
PERL_MM_USE_DEFAULT = 1
PROCESSOR_IDENTIFIER = x86 Family 6 Model 15 Stepping 11, GenuineIntel
TEMP = C:\WINDOWS\Temp
Perl special variables (and OS-specific diagnostics, for MSWin32):
$^X = C:\home\stro\perl\perl5132\bin\perl.exe
$UID/$EUID = 0 / 0
$GID = 0
$EGID = 0
Win32::GetOSName = WinXP/.Net
Win32::GetOSVersion = Service Pack 3, 5, 1, 2600, 2, 3, 0, 256, 1
Win32::FsType = NTFS
Win32::IsAdminUser = 1
Perl module toolchain versions installed:
Module Have
------------------- -------
CPAN 1.94_58
Cwd 3.31
ExtUtils::CBuilder 0.2703
ExtUtils::Command 1.16
ExtUtils::Install 1.55
ExtUtils::MakeMaker 6.56
ExtUtils::Manifest 1.58
ExtUtils::ParseXS 2.2206
File::Spec 3.31
Module::Build 0.3607
Module::Signature n/a
Test::Harness 3.21
Test::More 0.94
YAML 0.71
YAML::Syck 1.10
version 0.82
--
Summary of my perl5 (revision 5 version 13 subversion 2) configuration:
Platform:
osname=MSWin32, osvers=5.1, archname=MSWin32-x86-multi-thread
uname=''
config_args='undef'
hint=recommended, useposix=true, d_sigaction=undef
useithreads=define, usemultiplicity=define
useperlio=define, d_sfio=undef, uselargefiles=define, usesocks=undef
use64bitint=undef, use64bitall=undef, uselongdouble=undef
usemymalloc=n, bincompat5005=undef
Compiler:
cc='gcc', ccflags =' -s -O2 -DWIN32 -DHAVE_DES_FCRYPT -DPERL_IMPLICIT_CONTEXT -DPERL_IMPLICIT_SYS -fno-strict-aliasing -mms-bitfields -DPERL_MSVCRT_READFIX',
optimize='-s -O2',
cppflags='-DWIN32'
ccversion='', gccversion='3.4.5', gccosandvers=''
intsize=4, longsize=4, ptrsize=4, doublesize=8, byteorder=1234
d_longlong=undef, longlongsize=8, d_longdbl=define, longdblsize=12
ivtype='long', ivsize=4, nvtype='double', nvsize=8, Off_t='long long', lseeksize=8
alignbytes=8, prototype=define
Linker and Libraries:
ld='g++', ldflags ='-s -L"c:\home\stro\perl\perl5132\lib\CORE" -L"C:\MinGW\lib"'
libpth=C:\MinGW\lib
libs=-lmoldname -lkernel32 -luser32 -lgdi32 -lwinspool -lcomdlg32 -ladvapi32 -lshell32 -lole32 -loleaut32 -lnetapi32 -luuid -lws2_32 -lmpr -lwinmm -lversion -lodbc32 -lodbccp32 -lcomctl32
perllibs=-lmoldname -lkernel32 -luser32 -lgdi32 -lwinspool -lcomdlg32 -ladvapi32 -lshell32 -lole32 -loleaut32 -lnetapi32 -luuid -lws2_32 -lmpr -lwinmm -lversion -lodbc32 -lodbccp32 -lcomctl32
libc=, so=dll, useshrplib=true, libperl=libperl513.a
gnulibc_version=''
Dynamic Linking:
dlsrc=dl_win32.xs, dlext=dll, d_dlsymun=undef, ccdlflags=' '
cccdlflags=' ', lddlflags='-mdll -s -L"c:\home\stro\perl\perl5132\lib\CORE" -L"C:\MinGW\lib"'
Characteristics of this binary (from libperl):
Compile-time options: MULTIPLICITY PERL_DONT_CREATE_GVSV
PERL_IMPLICIT_CONTEXT PERL_IMPLICIT_SYS
PERL_MALLOC_WRAP PL_OP_SLAB_ALLOC USE_ITHREADS
USE_LARGE_FILES USE_PERLIO USE_PERL_ATOF
Built under MSWin32
Compiled at Jun 23 2010 13:38:12
%ENV:
PERL5_CPANPLUS_IS_RUNNING="3864"
PERL5_CPAN_IS_RUNNING="3864"
PERL5_CPAN_IS_RUNNING_IN_RECURSION="4872,3864"
PERL_CR_SMOKER_CURRENT="GOBO-0.03"
PERL_EXTUTILS_AUTOINSTALL="--defaultdeps"
PERL_MM_USE_DEFAULT="1"
@INC:
C:/home/stro/perl/perl5132/site/lib
C:/home/stro/perl/perl5132/lib
.