Convert-Pheno v0.27 Perl 5 v5.36.3 x86_64-linux

Status
Pass
From
Slaven Rezić
Dist
Convert-Pheno v0.27
Platform
Perl 5 v5.36.3 x86_64-linux
Date
2025-01-16 15:33:19
ID
363c0c38-d41f-11ef-93d6-a7f46d8775ea
This distribution has been tested as part of the CPAN Testers
project, supporting the Perl programming language.  See
http://wiki.cpantesters.org/ for more information or email
questions to cpan-testers-discuss@perl.org


--
Dear Manuel Rueda,

This is a computer-generated report for Convert-Pheno-0.27
on perl 5.36.3, created by CPAN-Reporter-1.2019.

Thank you for uploading your work to CPAN.  Congratulations!
All tests were successful.

Sections of this report:

    * Tester comments
    * Program output
    * Prerequisites
    * Environment and other context

------------------------------
TESTER COMMENTS
------------------------------

Additional comments from tester:

none provided

------------------------------
PROGRAM OUTPUT
------------------------------

Output from '/usr/bin/make test':

Skip blib/lib/auto/share/dist/Convert-Pheno/db/concepts_candidates_2_exposure.csv (unchanged)
Skip blib/lib/auto/share/dist/Convert-Pheno/ex/python.py (unchanged)
Skip blib/lib/auto/share/dist/Convert-Pheno/ex/perl.pl (unchanged)
Skip blib/lib/auto/share/dist/Convert-Pheno/db/omim.db (unchanged)
Skip blib/lib/auto/share/dist/Convert-Pheno/db/hpo.db (unchanged)
Skip blib/lib/auto/share/dist/Convert-Pheno/db/README (unchanged)
Skip blib/lib/auto/share/dist/Convert-Pheno/db/cdisc.db (unchanged)
Skip blib/lib/auto/share/dist/Convert-Pheno/schema/mapping.json (unchanged)
Skip blib/lib/auto/share/dist/Convert-Pheno/db/ncit.db (unchanged)
Skip blib/lib/auto/share/dist/Convert-Pheno/db/icd10.db (unchanged)
PERL_DL_NONLAZY=1 "/opt/perl-5.36.3/bin/perl" "-MExtUtils::Command::MM" "-MTest::Harness" "-e" "undef *Test::Harness::Switches; test_harness(0, 'blib/lib', 'blib/arch')" t/*.t
t/args.t ..... ok
t/cli.t ...... ok
t/mapping.t .. ok
t/module.t ... ok
t/stream.t ... ok
All tests successful.
Files=5, Tests=33, 10 wallclock secs ( 0.03 usr  0.01 sys +  8.93 cusr  0.65 csys =  9.62 CPU)
Result: PASS

------------------------------
PREREQUISITES
------------------------------

Prerequisite modules loaded:

requires:

    Module                         Need     Have    
    ------------------------------ -------- --------
    Data::Leaf::Walker             0.21     0.21    
    DBD::SQLite                    1.72     1.74    
    DBI                            1.643    1.643   
    Devel::Size                    0.84     0.84    
    File::ShareDir::ProjectDistDir 1.000009 1.000009
    Hash::Fold                     v1.0.0   v1.0.0  
    JSON::Validator                5.14     5.14    
    JSON::XS                       4.03     4.03    
    JSONLD                         0.006    0.006   
    Mojolicious                    9.33     9.38    
    Moo                            2.005005 2.005005
    Path::Tiny                     0.144    0.146   
    perl                           5.026000 5.036003
    Sort::Naturally                1.03     1.03    
    Term::ANSIColor                5.01     5.01    
    Text::CSV_XS                   1.50     1.54    
    Text::Similarity               0.13     0.13    
    Types::Standard                2.004000 2.006000
    XML::Fast                      0.17     0.17    
    YAML::XS                       0.88     v0.901.0

build_requires:

    Module                         Need     Have    
    ------------------------------ -------- --------
    ExtUtils::MakeMaker            0        7.70    
    Test::Deep                     1.204    1.204   
    Test::Exception                0.43     0.43    
    Test::More                     1.30     1.302204
    Test::Warn                     0.37     0.37    

configure_requires:

    Module                         Need     Have    
    ------------------------------ -------- --------
    ExtUtils::MakeMaker            7.70     7.70    
    File::ShareDir::Install        0.14     0.14    


------------------------------
ENVIRONMENT AND OTHER CONTEXT
------------------------------

Environment variables:

    LANG = en_US.UTF-8
    PATH = /usr/local/bin:/usr/bin:/bin:/usr/local/sbin:/usr/sbin:/sbin:/home/cpansand/bin/linux-gnu:/home/cpansand/bin/sh:/home/cpansand/bin:/usr/games:/home/cpansand/devel:/home/eserte/src/srezic-misc/scripts
    PERL5LIB = 
    PERL5OPT = 
    PERL5_CPANPLUS_IS_RUNNING = 525022
    PERL5_CPAN_IS_RUNNING = 525022
    PERL5_CPAN_IS_RUNNING_IN_RECURSION = 521982,525022
    PERLDOC = -MPod::Perldoc::ToTextOverstrike
    PERL_BATCH = yes
    PERL_CANARY_STABILITY_NOPROMPT = 1
    PERL_CPAN_REPORTER_CONFIG = /var/tmp/cpansmoker-1023/2025011615/cpanreporter_000_config.ini
    PERL_EXTUTILS_AUTOINSTALL = --defaultdeps
    PERL_USE_UNSAFE_INC = 1
    SHELL = /usr/bin/zsh
    TERM = screen
    TMPDIR = /var/tmp/cpansmoker-1023/2025011615

Perl special variables (and OS-specific diagnostics, for MSWin32):

    $^X = /opt/perl-5.36.3/bin/perl
    $UID/$EUID = 1023 / 1023
    $GID = 1023 1023
    $EGID = 1023 1023

Perl module toolchain versions installed:

    Module              Have    
    ------------------- --------
    CPAN                2.33    
    CPAN::Meta          2.150010
    Cwd                 3.84    
    ExtUtils::CBuilder  0.280236
    ExtUtils::Command   7.70    
    ExtUtils::Install   2.20    
    ExtUtils::MakeMaker 7.70    
    ExtUtils::Manifest  1.75    
    ExtUtils::ParseXS   3.45    
    File::Spec          3.84    
    JSON                4.10    
    JSON::PP            4.16    
    Module::Build       0.4234  
    Module::Signature   0.88    
    Parse::CPAN::Meta   2.150010
    Test2               1.302204
    Test::Harness       3.50    
    Test::More          1.302204
    YAML                1.31    
    YAML::Syck          1.34    
    version             0.9929  


--

Summary of my perl5 (revision 5 version 36 subversion 3) configuration:
   
  Platform:
    osname=linux
    osvers=6.6.8-100.fc38.x86_64
    archname=x86_64-linux
    uname='linux fedora39-2gb-hil 6.6.8-100.fc38.x86_64 #1 smp preempt_dynamic thu dec 21 04:01:45 utc 2023 x86_64 gnulinux '
    config_args='-ds -e -Dprefix=/opt/perl-5.36.3 -Dcf_email=srezic@cpan.org'
    hint=recommended
    useposix=true
    d_sigaction=define
    useithreads=undef
    usemultiplicity=undef
    use64bitint=define
    use64bitall=define
    uselongdouble=undef
    usemymalloc=n
    default_inc_excludes_dot=define
  Compiler:
    cc='cc'
    ccflags ='-fwrapv -fno-strict-aliasing -pipe -fstack-protector-strong -I/usr/local/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2'
    optimize='-O2'
    cppflags='-fwrapv -fno-strict-aliasing -pipe -fstack-protector-strong -I/usr/local/include'
    ccversion=''
    gccversion='13.2.1 20231205 (Red Hat 13.2.1-6)'
    gccosandvers=''
    intsize=4
    longsize=8
    ptrsize=8
    doublesize=8
    byteorder=12345678
    doublekind=3
    d_longlong=define
    longlongsize=8
    d_longdbl=define
    longdblsize=16
    longdblkind=3
    ivtype='long'
    ivsize=8
    nvtype='double'
    nvsize=8
    Off_t='off_t'
    lseeksize=8
    alignbytes=8
    prototype=define
  Linker and Libraries:
    ld='cc'
    ldflags =' -fstack-protector-strong -L/usr/local/lib'
    libpth=/usr/local/lib /usr/lib /usr/lib64 /usr/local/lib64
    libs=-lpthread -ldb -ldl -lm -lcrypt -lutil -lc
    perllibs=-lpthread -ldl -lm -lcrypt -lutil -lc
    libc=/lib/../lib64/libc.so.6
    so=so
    useshrplib=false
    libperl=libperl.a
    gnulibc_version='2.38'
  Dynamic Linking:
    dlsrc=dl_dlopen.xs
    dlext=so
    d_dlsymun=undef
    ccdlflags='-Wl,-E'
    cccdlflags='-fPIC'
    lddlflags='-shared -O2 -L/usr/local/lib -fstack-protector-strong'


Characteristics of this binary (from libperl): 
  Compile-time options:
    HAS_TIMES
    PERLIO_LAYERS
    PERL_COPY_ON_WRITE
    PERL_DONT_CREATE_GVSV
    PERL_MALLOC_WRAP
    PERL_OP_PARENT
    PERL_PRESERVE_IVUV
    USE_64_BIT_ALL
    USE_64_BIT_INT
    USE_LARGE_FILES
    USE_LOCALE
    USE_LOCALE_COLLATE
    USE_LOCALE_CTYPE
    USE_LOCALE_NUMERIC
    USE_LOCALE_TIME
    USE_PERLIO
    USE_PERL_ATOF
  Built under linux
  Compiled at Dec 26 2023 08:08:23
  %ENV:
    PERL5LIB=""
    PERL5OPT=""
    PERL5_CPANPLUS_IS_RUNNING="525022"
    PERL5_CPAN_IS_RUNNING="525022"
    PERL5_CPAN_IS_RUNNING_IN_RECURSION="521982,525022"
    PERLDOC="-MPod::Perldoc::ToTextOverstrike"
    PERL_BATCH="yes"
    PERL_CANARY_STABILITY_NOPROMPT="1"
    PERL_CPAN_REPORTER_CONFIG="/var/tmp/cpansmoker-1023/2025011615/cpanreporter_000_config.ini"
    PERL_EXTUTILS_AUTOINSTALL="--defaultdeps"
    PERL_USE_UNSAFE_INC="1"
  @INC:
    /opt/perl-5.36.3/lib/site_perl/5.36.3/x86_64-linux
    /opt/perl-5.36.3/lib/site_perl/5.36.3
    /opt/perl-5.36.3/lib/5.36.3/x86_64-linux
    /opt/perl-5.36.3/lib/5.36.3
    .