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From: metabase:user:3215efbe-2aae-11df-837a-5e0a49663a4f
Subject: FAIL go-perl-0.13 v5.14.2 GNU/Linux
Date: 2012-04-30T00:34:11Z
This distribution has been tested as part of the CPAN Testers
project, supporting the Perl programming language. See
http://wiki.cpantesters.org/ for more information or email
questions to cpan-testers-discuss@perl.org
--
Dear Chris Mungall,
This is a computer-generated report for go-perl-0.13
on perl 5.14.2, created by CPAN-Reporter-1.2006.
Thank you for uploading your work to CPAN. However, there was a problem
testing your distribution.
If you think this report is invalid, please consult the CPAN Testers Wiki
for suggestions on how to avoid getting FAIL reports for missing library
or binary dependencies, unsupported operating systems, and so on:
http://wiki.cpantesters.org/wiki/CPANAuthorNotes
Sections of this report:
* Tester comments
* Program output
* Prerequisites
* Environment and other context
------------------------------
TESTER COMMENTS
------------------------------
Additional comments from tester:
this report is from an automated smoke testing program
and was not reviewed by a human for accuracy
------------------------------
PROGRAM OUTPUT
------------------------------
Output from '/usr/bin/make test':
PERL_DL_NONLAZY=1 /opt/perls/threads/perl-5.14.2/bin/perl "-MExtUtils::Command::MM" "-e" "test_harness(0, 'blib/lib', 'blib/arch')" t/*.t
t/t010build.t ............ ok
t/t020paths.t ............ ok
t/t030detecterror.t ...... ok
t/t050oboformat.t ........ ok
t/t060oboformat2.t ....... ok
t/t070parseannot2obj.t ... ok
t/t080gofmt2.t ........... ok
t/t100roundtrip.t ........ ok
t/t110basic.t ............ ok
t/t130relations.t ........ ok
t/t140subgraph.t ......... ok
t/t150xref.t ............. ok
t/t160logicaldef.t ....... ok
sh: xsltproc: not found
problem running: xsltproc GO/xsl/oboxml_to_chadoxml.xsl TMP.30944.llm.obo-1.xml > TMP.30944.llm.obo-2.xml at GO/Parsers/base_parser.pm line 422.
GO::Parsers::base_parser::xsltproc('GO/xsl/oboxml_to_chadoxml.xsl', 'TMP.30944.llm.obo-1.xml', 'TMP.30944.llm.obo-2.xml') called at GO/Parsers/base_parser.pm line 388
GO::Parsers::base_parser::parse('GO::Parsers::obo_parser=HASH(0x404718)', './t/data/llm.obo') called at t/t170chadoxml.t line 45
t/t170chadoxml.t .........
Dubious, test returned 127 (wstat 32512, 0x7f00)
Failed 9/9 subtests
sh: xsltproc: not found
problem running: xsltproc GO/xsl/oboxml_to_chadoxml.xsl TMP.30946.llm2.obo-1.xml > TMP.30946.llm2.obo-2.xml at GO/Parsers/base_parser.pm line 422.
GO::Parsers::base_parser::xsltproc('GO/xsl/oboxml_to_chadoxml.xsl', 'TMP.30946.llm2.obo-1.xml', 'TMP.30946.llm2.obo-2.xml') called at GO/Parsers/base_parser.pm line 388
GO::Parsers::base_parser::parse('GO::Parsers::obo_parser=HASH(0x404858)', './t/data/llm2.obo') called at t/t175chadoxml_oborel.t line 45
t/t175chadoxml_oborel.t ..
Dubious, test returned 127 (wstat 32512, 0x7f00)
Failed 9/9 subtests
t/t180ncbi_taxonomy.t .... ok
t/t200impliedlinks.t ..... ok
t/t210cache.t ............ ok
t/t220xref_esc.t ......... ok
t/t230term_expression.t .. ok
t/t240ga2obj.t ........... ok
sh: xsltproc: not found
problem running: xsltproc GO/xsl/oboxml_to_chadoxml.xsl TMP.30954.go-with-local-id-mapping.obo-1.xml > TMP.30954.go-with-local-id-mapping.obo-2.xml at GO/Parsers/base_parser.pm line 422.
GO::Parsers::base_parser::xsltproc('GO/xsl/oboxml_to_chadoxml.xsl', 'TMP.30954.go-with-local-id-mapping.obo-1.xml', 'TMP.30954.go-with-local-id-mapping.obo-2.xml') called at GO/Parsers/base_parser.pm line 388
GO::Parsers::base_parser::parse('GO::Parsers::obo_parser=HASH(0x406b00)', './t/data/go-with-local-id-mapping.obo') called at t/t260oborel_in_chado.t line 44
t/t260oborel_in_chado.t ..
Dubious, test returned 127 (wstat 32512, 0x7f00)
Failed 6/6 subtests
sh: xsltproc: not found
problem running: xsltproc GO/xsl/oboxml_to_owl.xsl TMP.30956.go-with-local-id-mapping.obo-1.xml > TMP.30956.go-with-local-id-mapping.obo-2.xml at GO/Parsers/base_parser.pm line 422.
GO::Parsers::base_parser::xsltproc('GO/xsl/oboxml_to_owl.xsl', 'TMP.30956.go-with-local-id-mapping.obo-1.xml', 'TMP.30956.go-with-local-id-mapping.obo-2.xml') called at GO/Parsers/base_parser.pm line 388
GO::Parsers::base_parser::parse('GO::Parsers::obo_parser=HASH(0x406538)', './t/data/go-with-local-id-mapping.obo') called at t/t270oborel_in_owl.t line 44
t/t270oborel_in_owl.t ....
Dubious, test returned 127 (wstat 32512, 0x7f00)
Failed 4/4 subtests
t/t290disjoint.t ......... ok
Test Summary Report
-------------------
t/t170chadoxml.t (Wstat: 32512 Tests: 0 Failed: 0)
Non-zero exit status: 127
Parse errors: Bad plan. You planned 9 tests but ran 0.
t/t175chadoxml_oborel.t (Wstat: 32512 Tests: 0 Failed: 0)
Non-zero exit status: 127
Parse errors: Bad plan. You planned 9 tests but ran 0.
t/t260oborel_in_chado.t (Wstat: 32512 Tests: 0 Failed: 0)
Non-zero exit status: 127
Parse errors: Bad plan. You planned 6 tests but ran 0.
t/t270oborel_in_owl.t (Wstat: 32512 Tests: 0 Failed: 0)
Non-zero exit status: 127
Parse errors: Bad plan. You planned 4 tests but ran 0.
Files=24, Tests=112, 53 wallclock secs ( 1.45 usr 0.14 sys + 50.54 cusr 0.96 csys = 53.09 CPU)
Result: FAIL
Failed 4/24 test programs. 0/112 subtests failed.
make: *** [test_dynamic] Error 255
------------------------------
PREREQUISITES
------------------------------
Prerequisite modules loaded:
requires:
Module Need Have
------------------- ---- -----
Data::Dumper 0 2.131
Data::Stag 0.07 0.11
build_requires:
Module Need Have
------------------- ---- -----
ExtUtils::MakeMaker 0 6.62
configure_requires:
Module Need Have
------------------- ---- -----
ExtUtils::MakeMaker 0 6.62
------------------------------
ENVIRONMENT AND OTHER CONTEXT
------------------------------
Environment variables:
AUTOMATED_TESTING = 1
LANG = C
PATH = /opt/perls/threads/perl-5.14.2/bin:/usr/local/bin:/usr/bin:/bin:/usr/local/games:/usr/games
PERL5LIB =
PERL5OPT =
PERL5_CPANPLUS_IS_RUNNING = 30685
PERL5_CPAN_IS_RUNNING = 30685
PERL5_CPAN_IS_RUNNING_IN_RECURSION = 5849,30685
PERL_CR_SMOKER_CURRENT = EBI-FGPT-FuzzyRecogniser-0.07
PERL_EXTUTILS_AUTOINSTALL = --defaultdeps
PERL_MM_USE_DEFAULT = 1
SHELL = /bin/bash
TERM = screen
Perl special variables (and OS-specific diagnostics, for MSWin32):
$^X = /opt/perls/threads/perl-5.14.2/bin/perl
$UID/$EUID = 1000 / 1000
$GID = 1000 24 25 27 29 30 44 46 1000
$EGID = 1000 24 25 27 29 30 44 46 1000
Perl module toolchain versions installed:
Module Have
------------------- ------------
CPAN 1.9800
CPAN::Meta 2.120921
Cwd 3.36
ExtUtils::CBuilder 0.280205
ExtUtils::Command 1.17
ExtUtils::Install 1.56
ExtUtils::MakeMaker 6.62
ExtUtils::Manifest 1.58
ExtUtils::ParseXS 3.15
File::Spec 3.33
JSON 2.53
JSON::PP 2.27200
Module::Build 0.40
Module::Signature 0.68
Parse::CPAN::Meta 1.4404
Test::Harness 3.23
Test::More 1.005000_005
YAML 0.81
YAML::Syck 1.20
version 0.99
--
Summary of my perl5 (revision 5 version 14 subversion 2) configuration:
Platform:
osname=linux, osvers=2.6.32-5-kirkwood, archname=armv5tel-linux-thread-multi
uname='linux plugpc 2.6.32-5-kirkwood #1 tue mar 8 10:56:14 utc 2011 armv5tel gnulinux '
config_args='-des -Dprefix=/opt/perls/threads/perl-5.14.2 -Dusethreads'
hint=recommended, useposix=true, d_sigaction=define
useithreads=define, usemultiplicity=define
useperlio=define, d_sfio=undef, uselargefiles=define, usesocks=undef
use64bitint=undef, use64bitall=undef, uselongdouble=undef
usemymalloc=n, bincompat5005=undef
Compiler:
cc='cc', ccflags ='-D_REENTRANT -D_GNU_SOURCE -fno-strict-aliasing -pipe -fstack-protector -I/usr/local/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64',
optimize='-O2',
cppflags='-D_REENTRANT -D_GNU_SOURCE -fno-strict-aliasing -pipe -fstack-protector -I/usr/local/include'
ccversion='', gccversion='4.4.5', gccosandvers=''
intsize=4, longsize=4, ptrsize=4, doublesize=8, byteorder=1234
d_longlong=define, longlongsize=8, d_longdbl=define, longdblsize=8
ivtype='long', ivsize=4, nvtype='double', nvsize=8, Off_t='off_t', lseeksize=8
alignbytes=8, prototype=define
Linker and Libraries:
ld='cc', ldflags =' -fstack-protector -L/usr/local/lib'
libpth=/usr/local/lib /lib /usr/lib /usr/lib/arm-linux-gnueabi
libs=-lnsl -lgdbm -ldb -ldl -lm -lcrypt -lutil -lpthread -lc -lgdbm_compat
perllibs=-lnsl -ldl -lm -lcrypt -lutil -lpthread -lc
libc=/lib/libc-2.11.3.so, so=so, useshrplib=false, libperl=libperl.a
gnulibc_version='2.11.3'
Dynamic Linking:
dlsrc=dl_dlopen.xs, dlext=so, d_dlsymun=undef, ccdlflags='-Wl,-E'
cccdlflags='-fPIC', lddlflags='-shared -O2 -L/usr/local/lib -fstack-protector'
Characteristics of this binary (from libperl):
Compile-time options: MULTIPLICITY PERL_DONT_CREATE_GVSV
PERL_IMPLICIT_CONTEXT PERL_MALLOC_WRAP
PERL_PRESERVE_IVUV USE_ITHREADS USE_LARGE_FILES
USE_PERLIO USE_PERL_ATOF USE_REENTRANT_API
Built under linux
Compiled at Apr 21 2012 12:38:18
%ENV:
PERL5LIB=""
PERL5OPT=""
PERL5_CPANPLUS_IS_RUNNING="30685"
PERL5_CPAN_IS_RUNNING="30685"
PERL5_CPAN_IS_RUNNING_IN_RECURSION="5849,30685"
PERL_CR_SMOKER_CURRENT="EBI-FGPT-FuzzyRecogniser-0.07"
PERL_EXTUTILS_AUTOINSTALL="--defaultdeps"
PERL_MM_USE_DEFAULT="1"
@INC:
/opt/perls/threads/perl-5.14.2/lib/site_perl/5.14.2/armv5tel-linux-thread-multi
/opt/perls/threads/perl-5.14.2/lib/site_perl/5.14.2
/opt/perls/threads/perl-5.14.2/lib/5.14.2/armv5tel-linux-thread-multi
/opt/perls/threads/perl-5.14.2/lib/5.14.2
.