Bio-FastParsers v0.173510 Perl 5 v5.18.2 MSWin32-x86-multi-thread-64int
- Status
- Fail
- From
- Alexandr Ciornii (CHORNY)
- Dist
-
Bio-FastParsers v0.173510
- Platform
- Perl 5 v5.18.2 MSWin32-x86-multi-thread-64int
- Date
- 2017-12-17 15:46:48
- ID
- 1f37b9c0-6bf4-1014-b54c-c0d0c3312d2c
This distribution has been tested as part of the CPAN Testers
project, supporting the Perl programming language. See
http://wiki.cpantesters.org/ for more information or email
questions to cpan-testers-discuss@perl.org
--
Dear Denis BAURAIN,
This is a computer-generated report for Bio-FastParsers-0.173510
on perl 5.18.2, created by CPAN-Reporter-1.2018.
Thank you for uploading your work to CPAN. However, there was a problem
testing your distribution.
If you think this report is invalid, please consult the CPAN Testers Wiki
for suggestions on how to avoid getting FAIL reports for missing library
or binary dependencies, unsupported operating systems, and so on:
http://wiki.cpantesters.org/wiki/CPANAuthorNotes
Sections of this report:
* Tester comments
* Program output
* Prerequisites
* Environment and other context
------------------------------
TESTER COMMENTS
------------------------------
Additional comments from tester:
this report is from an automated smoke testing program
and was not reviewed by a human for accuracy
------------------------------
PROGRAM OUTPUT
------------------------------
Output from 'C:\strawberry182\c\bin\dmake.exe test':
C:\strawberry182\perl\bin\perl.exe "-MExtUtils::Command::MM" "-MTest::Harness" "-e" "undef *Test::Harness::Switches; test_harness(0, 'blib\lib', 'blib\arch')" t/*.t
t/author-critic.t ....... skipped: these tests are for testing by the author
t/author-pod-syntax.t ... skipped: these tests are for testing by the author
t/author-portability.t .. skipped: these tests are for testing by the author
t/blast_table.t ......... ok
Warning: 'test\empty.xml' unexpectedly empty; returning no BlastOutput! at reader Bio::FastParsers::Blast::Xml::blast_output (defined at C:\strawberry182\cpan\build\Bio-FastParsers-0.173510-h0KLn4\blib\lib/Bio/FastParsers/Blast/Xml.pm line 20) line 7.
t/blast_xml.t ........... ok
t/cd_hit.t .............. ok
# Failed test 'got expected values for all methods for hit-3'
# at t/hmmer_dom_table.t line 90.
# Compared $data->[11]
# got : '1.9e-023'
# expect : '1.9e-23'
# Failed test 'got expected values for all methods for hit-4'
# at t/hmmer_dom_table.t line 90.
# Compared $data->[6]
# got : '9.8e-264'
# expect : '9.79999999999999e-264'
# Failed test 'got expected values for all methods for hit-5'
# at t/hmmer_dom_table.t line 90.
# Compared $data->[6]
# got : '3.1e-007'
# expect : '3.1e-07'
# Failed test 'got expected values for all methods for hit-6'
# at t/hmmer_dom_table.t line 90.
# Compared $data->[6]
# got : '3.1e-007'
# expect : '3.1e-07'
# Failed test 'got expected values for all methods for hit-0'
# at t/hmmer_dom_table.t line 90.
# Compared $data->[6]
# got : '1e-060'
# expect : '1e-60'
# Failed test 'got expected values for all methods for hit-1'
# at t/hmmer_dom_table.t line 90.
# Compared $data->[6]
# got : '3.4e-053'
# expect : '3.4e-53'
# Failed test 'got expected values for all methods for hit-2'
# at t/hmmer_dom_table.t line 90.
# Compared $data->[6]
# got : '1.3e-046'
# expect : '1.3e-46'
# Failed test 'got expected values for all methods for hit-3'
# at t/hmmer_dom_table.t line 90.
# Compared $data->[6]
# got : '3.8e-046'
# expect : '3.8e-46'
# Failed test 'got expected values for all methods for hit-4'
# at t/hmmer_dom_table.t line 90.
# Compared $data->[6]
# got : '9.3e-046'
# expect : '9.3e-46'
# Failed test 'got expected values for all methods for hit-5'
# at t/hmmer_dom_table.t line 90.
# Compared $data->[6]
# got : '2.3e-045'
# expect : '2.3e-45'
# Failed test 'got expected values for all methods for hit-6'
# at t/hmmer_dom_table.t line 90.
# Compared $data->[6]
# got : '1.2e-035'
# expect : '1.2e-35'
# Failed test 'got expected values for all methods for hit-7'
# at t/hmmer_dom_table.t line 90.
# Compared $data->[6]
# got : '2.1e-025'
# expect : '2.1e-25'
# Failed test 'got expected values for all methods for hit-8'
# at t/hmmer_dom_table.t line 90.
# Compared $data->[11]
# got : '1.6e-006'
# expect : '1.6e-06'
# Failed test 'got expected values for all methods for hit-9'
# at t/hmmer_dom_table.t line 90.
# Compared $data->[11]
# got : '4.5e-006'
# expect : '4.5e-06'
# Failed test 'got expected values for all methods for hit-10'
# at t/hmmer_dom_table.t line 90.
# Compared $data->[11]
# got : '1.4e-005'
# expect : '1.4e-05'
# Failed test 'got expected values for all methods for hit-11'
# at t/hmmer_dom_table.t line 90.
# Compared $data->[11]
# got : '1.4e-005'
# expect : '1.4e-05'
# Failed test 'got expected values for all methods for hit-12'
# at t/hmmer_dom_table.t line 90.
# Compared $data->[11]
# got : '1.2e-005'
# expect : '1.2e-05'
# Failed test 'got expected values for all methods for hit-13'
# at t/hmmer_dom_table.t line 90.
# Compared $data->[11]
# got : '8.6e-005'
# expect : '8.6e-05'
# Failed test 'got expected values for all methods for hit-14'
# at t/hmmer_dom_table.t line 90.
# Compared $data->[11]
# got : '8.6e-005'
# expect : '8.6e-05'
# Looks like you failed 19 tests of 127.
t/hmmer_dom_table.t .....
Dubious, test returned 19 (wstat 4864, 0x1300)
Failed 19/127 subtests
t/hmmer_model.t ......... ok
# Failed test 'got exp values for all methods for target-0'
# at t/hmmer_std.t line 153.
# Compared $data->[0]
# got : '4.6e-005'
# expect : '4.6e-05'
# Looks like you failed 1 test of 100.
t/hmmer_std.t ...........
Dubious, test returned 1 (wstat 256, 0x100)
Failed 1/100 subtests
# Failed test 'got expected values for all methods for hit-21'
# at t/hmmer_table.t line 105.
# Compared $data->[4]
# got : '7.7e-079'
# expect : '7.7e-79'
# Failed test 'got expected values for all methods for hit-22'
# at t/hmmer_table.t line 105.
# Compared $data->[4]
# got : '1.6e-077'
# expect : '1.6e-77'
# Failed test 'got expected values for all methods for hit-23'
# at t/hmmer_table.t line 105.
# Compared $data->[4]
# got : '2.6e-075'
# expect : '2.6e-75'
# Failed test 'got expected values for all methods for hit-24'
# at t/hmmer_table.t line 105.
# Compared $data->[4]
# got : '6.8e-072'
# expect : '6.8e-72'
# Failed test 'got expected values for all methods for hit-25'
# at t/hmmer_table.t line 105.
# Compared $data->[4]
# got : '9.4e-071'
# expect : '9.4e-71'
# Failed test 'got expected values for all methods for hit-26'
# at t/hmmer_table.t line 105.
# Compared $data->[4]
# got : '1.3e-013'
# expect : '1.3e-13'
# Failed test 'got expected values for all methods for hit-27'
# at t/hmmer_table.t line 105.
# Compared $data->[4]
# got : '1.7e-013'
# expect : '1.7e-13'
# Failed test 'got expected values for all methods for hit-28'
# at t/hmmer_table.t line 105.
# Compared $data->[4]
# got : '4.7e-013'
# expect : '4.7e-13'
# Failed test 'got expected values for all methods for hit-29'
# at t/hmmer_table.t line 105.
# Compared $data->[4]
# got : '4.8e-013'
# expect : '4.8e-13'
# Failed test 'got expected values for all methods for hit-30'
# at t/hmmer_table.t line 105.
# Compared $data->[4]
# got : '8.2e-013'
# expect : '8.2e-13'
# Failed test 'got expected values for all methods for hit-31'
# at t/hmmer_table.t line 105.
# Compared $data->[4]
# got : '3.2e-012'
# expect : '3.2e-12'
# Failed test 'got expected values for all methods for hit-32'
# at t/hmmer_table.t line 105.
# Compared $data->[4]
# got : '7.5e-012'
# expect : '7.5e-12'
# Failed test 'got expected values for all methods for hit-33'
# at t/hmmer_table.t line 105.
# Compared $data->[4]
# got : '7.5e-012'
# expect : '7.5e-12'
# Failed test 'got expected values for all methods for hit-34'
# at t/hmmer_table.t line 105.
# Compared $data->[4]
# got : '9.2e-012'
# expect : '9.2e-12'
# Failed test 'got expected values for all methods for hit-35'
# at t/hmmer_table.t line 105.
# Compared $data->[4]
# got : '9.6e-012'
# expect : '9.6e-12'
# Failed test 'got expected values for all methods for hit-36'
# at t/hmmer_table.t line 105.
# Compared $data->[4]
# got : '1.1e-011'
# expect : '1.1e-11'
# Failed test 'got expected values for all methods for hit-37'
# at t/hmmer_table.t line 105.
# Compared $data->[4]
# got : '4.5e-011'
# expect : '4.5e-11'
# Failed test 'got expected values for all methods for hit-0'
# at t/hmmer_table.t line 105.
# Compared $data->[4]
# got : '1e-060'
# expect : '1e-60'
# Failed test 'got expected values for all methods for hit-1'
# at t/hmmer_table.t line 105.
# Compared $data->[4]
# got : '3.4e-053'
# expect : '3.4e-53'
# Failed test 'got expected values for all methods for hit-2'
# at t/hmmer_table.t line 105.
# Compared $data->[4]
# got : '1.3e-046'
# expect : '1.3e-46'
# Failed test 'got expected values for all methods for hit-3'
# at t/hmmer_table.t line 105.
# Compared $data->[4]
# got : '3.8e-046'
# expect : '3.8e-46'
# Failed test 'got expected values for all methods for hit-4'
# at t/hmmer_table.t line 105.
# Compared $data->[4]
# got : '9.3e-046'
# expect : '9.3e-46'
# Failed test 'got expected values for all methods for hit-5'
# at t/hmmer_table.t line 105.
# Compared $data->[4]
# got : '2.3e-045'
# expect : '2.3e-45'
# Failed test 'got expected values for all methods for hit-6'
# at t/hmmer_table.t line 105.
# Compared $data->[4]
# got : '1.2e-035'
# expect : '1.2e-35'
# Failed test 'got expected values for all methods for hit-7'
# at t/hmmer_table.t line 105.
# Compared $data->[4]
# got : '2.1e-025'
# expect : '2.1e-25'
# Looks like you failed 25 tests of 178.
t/hmmer_table.t .........
Dubious, test returned 25 (wstat 6400, 0x1900)
Failed 25/178 subtests
Test Summary Report
-------------------
t/hmmer_dom_table.t (Wstat: 4864 Tests: 127 Failed: 19)
Failed tests: 14, 17, 20, 23, 64, 67, 70, 73, 76, 79
82, 85, 88, 91, 94, 97, 100, 103, 106
Non-zero exit status: 19
t/hmmer_std.t (Wstat: 256 Tests: 100 Failed: 1)
Failed test: 96
Non-zero exit status: 1
t/hmmer_table.t (Wstat: 6400 Tests: 178 Failed: 25)
Failed tests: 68, 71, 74, 77, 80, 83, 86, 89, 92, 95
98, 101, 104, 107, 110, 113, 116, 121, 124
127, 130, 133, 136, 139, 142
Non-zero exit status: 25
Files=10, Tests=817, 30 wallclock secs ( 0.07 usr + 0.22 sys = 0.29 CPU)
Result: FAIL
Failed 3/10 test programs. 45/817 subtests failed.
dmake.exe: Error code 153, while making 'test_dynamic'
------------------------------
PREREQUISITES
------------------------------
Prerequisite modules loaded:
requires:
Module Need Have
---------------------------- ----- --------
aliased 0 0.31
autodie 0 2.22
Carp 0 1.32
Const::Fast 0 0.014
Exporter::Easy 0 0.16
feature 0 1.32
List::AllUtils 0 0.07
Moose 0 2.1204
Moose::Role 0 2.1204
Moose::Util::TypeConstraints 0 2.1204
namespace::autoclean 0 0.15
Path::Class 0 0.33
perl 5.010 5.018002
Smart::Comments 0 1.000005
strict 0 1.07
Test::Most 0 0.33
Tie::IxHash 0 1.23
warnings 0 1.18
XML::Bare 0.53 0.53
build_requires:
Module Need Have
---------------------------- ----- --------
ExtUtils::MakeMaker 0 6.84
Test::Most 0 0.33
configure_requires:
Module Need Have
---------------------------- ----- --------
ExtUtils::MakeMaker 0 6.84
perl 5.010 5.018002
------------------------------
ENVIRONMENT AND OTHER CONTEXT
------------------------------
Environment variables:
AUTOMATED_TESTING = 1
COMSPEC = C:\WINDOWS\system32\cmd.exe
NUMBER_OF_PROCESSORS = 1
PATH = C:\WINDOWS\system32;C:\WINDOWS;C:\WINDOWS\System32\Wbem;C:\strawberry182\c\bin;C:\strawberry182\perl\site\bin;C:\strawberry182\perl\bin
PERL5LIB = C:\strawberry182\cpan\build\XML-Bare-0.53-JPUWnq/blib/arch;C:\strawberry182\cpan\build\XML-Bare-0.53-JPUWnq/blib/lib
PERL5OPT =
PERL5_CPANPLUS_IS_RUNNING = 1836
PERL5_CPAN_IS_RUNNING = 1836
PERL5_CPAN_IS_RUNNING_IN_RECURSION = 1012,1836
PERL_CR_SMOKER_CURRENT = Bio-MUST-Drivers-0.173510
PERL_CR_SMOKER_RUNONCE = 1
PERL_EXTUTILS_AUTOINSTALL = --defaultdeps
PERL_HASH_SEED = 0x11111111
PERL_MM_USE_DEFAULT = 1
PROCESSOR_IDENTIFIER = x86 Family 16 Model 5 Stepping 3, AuthenticAMD
TEMP = C:\DOCUME~1\c\LOCALS~1\Temp
TERM = dumb
Perl special variables (and OS-specific diagnostics, for MSWin32):
$^X = C:\strawberry182\perl\bin\perl.exe
$UID/$EUID = 0 / 0
$GID = 0
$EGID = 0
Win32::GetOSName = WinXP/.Net
Win32::GetOSVersion = Service Pack 3, 5, 1, 2600, 2, 3, 0, 256, 1
Win32::FsType = NTFS
Win32::IsAdminUser = 1
Perl module toolchain versions installed:
Module Have
------------------- --------
CPAN 2.00
CPAN::Meta 2.133380
Cwd 3.40
ExtUtils::CBuilder 0.280212
ExtUtils::Command 1.18
ExtUtils::Install 1.59
ExtUtils::MakeMaker 6.84
ExtUtils::Manifest 1.63
ExtUtils::ParseXS 3.22
File::Spec 3.40
JSON 2.90
JSON::PP 2.27203
Module::Build 0.4203
Module::Signature n/a
Parse::CPAN::Meta 1.4414
Test::Harness 3.30
Test::More 1.001002
YAML 0.90
YAML::Syck 1.27
version 0.9904
--
Summary of my perl5 (revision 5 version 18 subversion 2) configuration:
Platform:
osname=MSWin32, osvers=6.2, archname=MSWin32-x86-multi-thread-64int
uname='Win32 strawberry-perl 5.18.2.1 #1 Tue Jan 7 16:30:36 2014 i386'
config_args='undef'
hint=recommended, useposix=true, d_sigaction=undef
useithreads=define, usemultiplicity=define
useperlio=define, d_sfio=undef, uselargefiles=define, usesocks=undef
use64bitint=define, use64bitall=undef, uselongdouble=undef
usemymalloc=n, bincompat5005=undef
Compiler:
cc='gcc', ccflags =' -s -O2 -DWIN32 -DPERL_TEXTMODE_SCRIPTS -DPERL_IMPLICIT_CONTEXT -DPERL_IMPLICIT_SYS -DUSE_PERLIO -fno-strict-aliasing -mms-bitfields',
optimize='-s -O2',
cppflags='-DWIN32'
ccversion='', gccversion='4.7.3', gccosandvers=''
intsize=4, longsize=4, ptrsize=4, doublesize=8, byteorder=12345678
d_longlong=define, longlongsize=8, d_longdbl=define, longdblsize=12
ivtype='long long', ivsize=8, nvtype='double', nvsize=8, Off_t='long long', lseeksize=8
alignbytes=8, prototype=define
Linker and Libraries:
ld='g++', ldflags ='-s -L"C:\strawberry182\perl\lib\CORE" -L"C:\strawberry182\c\lib"'
libpth=C:\strawberry182\c\lib C:\strawberry182\c\i686-w64-mingw32\lib C:\strawberry182\c\lib\gcc\i686-w64-mingw32\4.7.3
libs=-lmoldname -lkernel32 -luser32 -lgdi32 -lwinspool -lcomdlg32 -ladvapi32 -lshell32 -lole32 -loleaut32 -lnetapi32 -luuid -lws2_32 -lmpr -lwinmm -lversion -lodbc32 -lodbccp32 -lcomctl32
perllibs=-lmoldname -lkernel32 -luser32 -lgdi32 -lwinspool -lcomdlg32 -ladvapi32 -lshell32 -lole32 -loleaut32 -lnetapi32 -luuid -lws2_32 -lmpr -lwinmm -lversion -lodbc32 -lodbccp32 -lcomctl32
libc=, so=dll, useshrplib=true, libperl=libperl518.a
gnulibc_version=''
Dynamic Linking:
dlsrc=dl_win32.xs, dlext=dll, d_dlsymun=undef, ccdlflags=' '
cccdlflags=' ', lddlflags='-mdll -s -L"C:\strawberry182\perl\lib\CORE" -L"C:\strawberry182\c\lib"'
Characteristics of this binary (from libperl):
Compile-time options: HAS_TIMES HAVE_INTERP_INTERN MULTIPLICITY
PERLIO_LAYERS PERL_DONT_CREATE_GVSV
PERL_HASH_FUNC_ONE_AT_A_TIME_HARD
PERL_IMPLICIT_CONTEXT PERL_IMPLICIT_SYS
PERL_MALLOC_WRAP PERL_PRESERVE_IVUV PERL_SAWAMPERSAND
USE_64_BIT_INT USE_ITHREADS USE_LARGE_FILES
USE_LOCALE USE_LOCALE_COLLATE USE_LOCALE_CTYPE
USE_LOCALE_NUMERIC USE_PERLIO USE_PERL_ATOF
Built under MSWin32
Compiled at Jan 7 2014 16:39:31
%ENV:
PERL5LIB="C:\strawberry182\cpan\build\XML-Bare-0.53-JPUWnq/blib/arch;C:\strawberry182\cpan\build\XML-Bare-0.53-JPUWnq/blib/lib"
PERL5_CPANPLUS_IS_RUNNING="1836"
PERL5_CPAN_IS_RUNNING="1836"
PERL5_CPAN_IS_RUNNING_IN_RECURSION="1012,1836"
PERL_CR_SMOKER_CURRENT="Bio-MUST-Drivers-0.173510"
PERL_CR_SMOKER_RUNONCE="1"
PERL_EXTUTILS_AUTOINSTALL="--defaultdeps"
PERL_HASH_SEED="0x11111111"
PERL_MM_USE_DEFAULT="1"
@INC:
C:\strawberry182\cpan\build\XML-Bare-0.53-JPUWnq/blib/arch
C:\strawberry182\cpan\build\XML-Bare-0.53-JPUWnq/blib/lib
C:/strawberry182/perl/site/lib
C:/strawberry182/perl/vendor/lib
C:/strawberry182/perl/lib
.