Bio-FastParsers v0.173450 Perl 5 v5.12.2 MSWin32-x86-multi-thread

Status

Fail

From

Alexandr Ciornii (CHORNY)

Dist

Bio-FastParsers v0.173450

Platform

Perl 5 v5.12.2 MSWin32-x86-multi-thread

Date

2017-12-12 15:16:08

ID

0d88a01c-6bfd-1014-9f5b-6d42e3a026f6

This distribution has been tested as part of the CPAN Testers
project, supporting the Perl programming language.  See
http://wiki.cpantesters.org/ for more information or email
questions to cpan-testers-discuss@perl.org


--
Dear Denis BAURAIN,

This is a computer-generated report for Bio-FastParsers-0.173450
on perl 5.12.2, created by CPAN-Reporter-1.2014.

Thank you for uploading your work to CPAN.  However, there was a problem
testing your distribution.

If you think this report is invalid, please consult the CPAN Testers Wiki
for suggestions on how to avoid getting FAIL reports for missing library
or binary dependencies, unsupported operating systems, and so on:

http://wiki.cpantesters.org/wiki/CPANAuthorNotes

Sections of this report:

    * Tester comments
    * Program output
    * Prerequisites
    * Environment and other context

------------------------------
TESTER COMMENTS
------------------------------

Additional comments from tester:

this report is from an automated smoke testing program
and was not reviewed by a human for accuracy

------------------------------
PROGRAM OUTPUT
------------------------------

Output from 'C:\strawberry\c\bin\dmake.EXE test':

C:\strawberry\perl\bin\perl.exe "-MExtUtils::Command::MM" "-MTest::Harness" "-e" "undef *Test::Harness::Switches; test_harness(0, 'blib\lib', 'blib\arch')" t/*.t
t/author-critic.t ....... skipped: these tests are for testing by the author
t/author-pod-syntax.t ... skipped: these tests are for testing by the author
t/author-portability.t .. skipped: these tests are for testing by the author
t/blast_table.t ......... ok
Warning: 'test\empty.xml' unexpectedly empty; returning no BlastOutput! at reader Bio::FastParsers::Blast::Xml::blast_output (defined at C:\strawberry\cpan\build\Bio-FastParsers-0.173450-xPHE8d\blib\lib/Bio/FastParsers/Blast/Xml.pm line 20) line 7.
t/blast_xml.t ........... ok

#   Failed test 'got expected values for all methods for hit-3'
#   at t/hmmer_dom_table.t line 90.
# Compared $data->[11]
#    got : '1.9e-023'
# expect : '1.9e-23'

#   Failed test 'got expected values for all methods for hit-4'
#   at t/hmmer_dom_table.t line 90.
# Compared $data->[6]
#    got : '9.8e-264'
# expect : '9.79999999999999e-264'

#   Failed test 'got expected values for all methods for hit-5'
#   at t/hmmer_dom_table.t line 90.
# Compared $data->[6]
#    got : '3.1e-007'
# expect : '3.1e-07'

#   Failed test 'got expected values for all methods for hit-6'
#   at t/hmmer_dom_table.t line 90.
# Compared $data->[6]
#    got : '3.1e-007'
# expect : '3.1e-07'

#   Failed test 'got expected values for all methods for hit-0'
#   at t/hmmer_dom_table.t line 90.
# Compared $data->[6]
#    got : '1e-060'
# expect : '1e-60'

#   Failed test 'got expected values for all methods for hit-1'
#   at t/hmmer_dom_table.t line 90.
# Compared $data->[6]
#    got : '3.4e-053'
# expect : '3.4e-53'

#   Failed test 'got expected values for all methods for hit-2'
#   at t/hmmer_dom_table.t line 90.
# Compared $data->[6]
#    got : '1.3e-046'
# expect : '1.3e-46'

#   Failed test 'got expected values for all methods for hit-3'
#   at t/hmmer_dom_table.t line 90.
# Compared $data->[6]
#    got : '3.8e-046'
# expect : '3.8e-46'

#   Failed test 'got expected values for all methods for hit-4'
#   at t/hmmer_dom_table.t line 90.
# Compared $data->[6]
#    got : '9.3e-046'
# expect : '9.3e-46'

#   Failed test 'got expected values for all methods for hit-5'
#   at t/hmmer_dom_table.t line 90.
# Compared $data->[6]
#    got : '2.3e-045'
# expect : '2.3e-45'

#   Failed test 'got expected values for all methods for hit-6'
#   at t/hmmer_dom_table.t line 90.
# Compared $data->[6]
#    got : '1.2e-035'
# expect : '1.2e-35'

#   Failed test 'got expected values for all methods for hit-7'
#   at t/hmmer_dom_table.t line 90.
# Compared $data->[6]
#    got : '2.1e-025'
# expect : '2.1e-25'

#   Failed test 'got expected values for all methods for hit-8'
#   at t/hmmer_dom_table.t line 90.
# Compared $data->[11]
#    got : '1.6e-006'
# expect : '1.6e-06'

#   Failed test 'got expected values for all methods for hit-9'
#   at t/hmmer_dom_table.t line 90.
# Compared $data->[11]
#    got : '4.5e-006'
# expect : '4.5e-06'

#   Failed test 'got expected values for all methods for hit-10'
#   at t/hmmer_dom_table.t line 90.
# Compared $data->[11]
#    got : '1.4e-005'
# expect : '1.4e-05'

#   Failed test 'got expected values for all methods for hit-11'
#   at t/hmmer_dom_table.t line 90.
# Compared $data->[11]
#    got : '1.4e-005'
# expect : '1.4e-05'

#   Failed test 'got expected values for all methods for hit-12'
#   at t/hmmer_dom_table.t line 90.
# Compared $data->[11]
#    got : '1.2e-005'
# expect : '1.2e-05'

#   Failed test 'got expected values for all methods for hit-13'
#   at t/hmmer_dom_table.t line 90.
# Compared $data->[11]
#    got : '8.6e-005'
# expect : '8.6e-05'

#   Failed test 'got expected values for all methods for hit-14'
#   at t/hmmer_dom_table.t line 90.
# Compared $data->[11]
#    got : '8.6e-005'
# expect : '8.6e-05'
# Looks like you failed 19 tests of 127.
t/hmmer_dom_table.t ..... 
Dubious, test returned 19 (wstat 4864, 0x1300)
Failed 19/127 subtests 
t/hmmer_model.t ......... ok

#   Failed test 'got exp values for all methods for target-0'
#   at t/hmmer_std.t line 153.
# Compared $data->[0]
#    got : '4.6e-005'
# expect : '4.6e-05'
# Looks like you failed 1 test of 100.
t/hmmer_std.t ........... 
Dubious, test returned 1 (wstat 256, 0x100)
Failed 1/100 subtests 

#   Failed test 'got expected values for all methods for hit-21'
#   at t/hmmer_table.t line 105.
# Compared $data->[4]
#    got : '7.7e-079'
# expect : '7.7e-79'

#   Failed test 'got expected values for all methods for hit-22'
#   at t/hmmer_table.t line 105.
# Compared $data->[4]
#    got : '1.6e-077'
# expect : '1.6e-77'

#   Failed test 'got expected values for all methods for hit-23'
#   at t/hmmer_table.t line 105.
# Compared $data->[4]
#    got : '2.6e-075'
# expect : '2.6e-75'

#   Failed test 'got expected values for all methods for hit-24'
#   at t/hmmer_table.t line 105.
# Compared $data->[4]
#    got : '6.8e-072'
# expect : '6.8e-72'

#   Failed test 'got expected values for all methods for hit-25'
#   at t/hmmer_table.t line 105.
# Compared $data->[4]
#    got : '9.4e-071'
# expect : '9.4e-71'

#   Failed test 'got expected values for all methods for hit-26'
#   at t/hmmer_table.t line 105.
# Compared $data->[4]
#    got : '1.3e-013'
# expect : '1.3e-13'

#   Failed test 'got expected values for all methods for hit-27'
#   at t/hmmer_table.t line 105.
# Compared $data->[4]
#    got : '1.7e-013'
# expect : '1.7e-13'

#   Failed test 'got expected values for all methods for hit-28'
#   at t/hmmer_table.t line 105.
# Compared $data->[4]
#    got : '4.7e-013'
# expect : '4.7e-13'

#   Failed test 'got expected values for all methods for hit-29'
#   at t/hmmer_table.t line 105.
# Compared $data->[4]
#    got : '4.8e-013'
# expect : '4.8e-13'

#   Failed test 'got expected values for all methods for hit-30'
#   at t/hmmer_table.t line 105.
# Compared $data->[4]
#    got : '8.2e-013'
# expect : '8.2e-13'

#   Failed test 'got expected values for all methods for hit-31'
#   at t/hmmer_table.t line 105.
# Compared $data->[4]
#    got : '3.2e-012'
# expect : '3.2e-12'

#   Failed test 'got expected values for all methods for hit-32'
#   at t/hmmer_table.t line 105.
# Compared $data->[4]
#    got : '7.5e-012'
# expect : '7.5e-12'

#   Failed test 'got expected values for all methods for hit-33'
#   at t/hmmer_table.t line 105.
# Compared $data->[4]
#    got : '7.5e-012'
# expect : '7.5e-12'

#   Failed test 'got expected values for all methods for hit-34'
#   at t/hmmer_table.t line 105.
# Compared $data->[4]
#    got : '9.2e-012'
# expect : '9.2e-12'

#   Failed test 'got expected values for all methods for hit-35'
#   at t/hmmer_table.t line 105.
# Compared $data->[4]
#    got : '9.6e-012'
# expect : '9.6e-12'

#   Failed test 'got expected values for all methods for hit-36'
#   at t/hmmer_table.t line 105.
# Compared $data->[4]
#    got : '1.1e-011'
# expect : '1.1e-11'

#   Failed test 'got expected values for all methods for hit-37'
#   at t/hmmer_table.t line 105.
# Compared $data->[4]
#    got : '4.5e-011'
# expect : '4.5e-11'

#   Failed test 'got expected values for all methods for hit-0'
#   at t/hmmer_table.t line 105.
# Compared $data->[4]
#    got : '1e-060'
# expect : '1e-60'

#   Failed test 'got expected values for all methods for hit-1'
#   at t/hmmer_table.t line 105.
# Compared $data->[4]
#    got : '3.4e-053'
# expect : '3.4e-53'

#   Failed test 'got expected values for all methods for hit-2'
#   at t/hmmer_table.t line 105.
# Compared $data->[4]
#    got : '1.3e-046'
# expect : '1.3e-46'

#   Failed test 'got expected values for all methods for hit-3'
#   at t/hmmer_table.t line 105.
# Compared $data->[4]
#    got : '3.8e-046'
# expect : '3.8e-46'

#   Failed test 'got expected values for all methods for hit-4'
#   at t/hmmer_table.t line 105.
# Compared $data->[4]
#    got : '9.3e-046'
# expect : '9.3e-46'

#   Failed test 'got expected values for all methods for hit-5'
#   at t/hmmer_table.t line 105.
# Compared $data->[4]
#    got : '2.3e-045'
# expect : '2.3e-45'

#   Failed test 'got expected values for all methods for hit-6'
#   at t/hmmer_table.t line 105.
# Compared $data->[4]
#    got : '1.2e-035'
# expect : '1.2e-35'

#   Failed test 'got expected values for all methods for hit-7'
#   at t/hmmer_table.t line 105.
# Compared $data->[4]
#    got : '2.1e-025'
# expect : '2.1e-25'
# Looks like you failed 25 tests of 178.
t/hmmer_table.t ......... 
Dubious, test returned 25 (wstat 6400, 0x1900)
Failed 25/178 subtests 

Test Summary Report
-------------------
t/hmmer_dom_table.t   (Wstat: 4864 Tests: 127 Failed: 19)
  Failed tests:  14, 17, 20, 23, 64, 67, 70, 73, 76, 79
                82, 85, 88, 91, 94, 97, 100, 103, 106
  Non-zero exit status: 19
t/hmmer_std.t         (Wstat: 256 Tests: 100 Failed: 1)
  Failed test:  96
  Non-zero exit status: 1
t/hmmer_table.t       (Wstat: 6400 Tests: 178 Failed: 25)
  Failed tests:  68, 71, 74, 77, 80, 83, 86, 89, 92, 95
                98, 101, 104, 107, 110, 113, 116, 121, 124
                127, 130, 133, 136, 139, 142
  Non-zero exit status: 25
Files=9, Tests=704, 14 wallclock secs ( 0.09 usr +  0.17 sys =  0.26 CPU)
Result: FAIL
Failed 3/9 test programs. 45/704 subtests failed.
dmake.EXE:  Error code 153, while making 'test_dynamic'

------------------------------
PREREQUISITES
------------------------------

Prerequisite modules loaded:

requires:

    Module                       Need  Have    
    ---------------------------- ----- --------
    aliased                      0     0.31    
    autodie                      0     2.25    
    Carp                         0     1.3301  
    Const::Fast                  0     0.014   
    Exporter::Easy               0     0.17    
    feature                      0     1.16    
    List::AllUtils               0     0.08    
    Moose                        0     2.1210  
    Moose::Role                  0     2.1210  
    Moose::Util::TypeConstraints 0     2.1210  
    namespace::autoclean         0     0.19    
    Path::Class                  0     0.33    
    perl                         5.010 5.012002
    Smart::Comments              0     1.000005
    strict                       0     1.04    
    Test::Most                   0     0.34    
    warnings                     0     1.09    
    XML::Bare                    0.53  0.53    

build_requires:

    Module                       Need  Have    
    ---------------------------- ----- --------
    ExtUtils::MakeMaker          0     6.98    
    Test::Most                   0     0.34    

configure_requires:

    Module                       Need  Have    
    ---------------------------- ----- --------
    ExtUtils::MakeMaker          0     6.98    
    perl                         5.010 5.012002


------------------------------
ENVIRONMENT AND OTHER CONTEXT
------------------------------

Environment variables:

    AUTOMATED_TESTING = 1
    COMSPEC = C:\WINDOWS\system32\cmd.exe
    NUMBER_OF_PROCESSORS = 1
    PATH = c:\Windows\system32;c:\Windows\System32\Wbem;C:\Git\cmd;C:\strawberry\c\bin;C:\strawberry\perl\site\bin;C:\strawberry\perl\bin
    PERL5LIB = C:\strawberry\cpan\build\XML-Bare-0.53-DzoQEG/blib/arch;C:\strawberry\cpan\build\XML-Bare-0.53-DzoQEG/blib/lib
    PERL5OPT = 
    PERL5_CPANPLUS_IS_RUNNING = 1516
    PERL5_CPAN_IS_RUNNING = 1516
    PERL5_CPAN_IS_RUNNING_IN_RECURSION = 1740,1516
    PERL_CR_SMOKER_CURRENT = Bio-FastParsers-0.173450
    PERL_CR_SMOKER_RUNONCE = 1
    PERL_EXTUTILS_AUTOINSTALL = --defaultdeps
    PERL_MM_USE_DEFAULT = 1
    PROCESSOR_IDENTIFIER = x86 Family 16 Model 5 Stepping 3, AuthenticAMD
    TEMP = C:\DOCUME~1\c\LOCALS~1\Temp
    TERM = dumb

Perl special variables (and OS-specific diagnostics, for MSWin32):

    $^X = C:\strawberry\perl\bin\perl.exe
    $UID/$EUID = 0 / 0
    $GID = 0
    $EGID = 0
    Win32::GetOSName = WinXP/.Net
    Win32::GetOSVersion = Service Pack 3, 5, 1, 2600, 2, 3, 0, 256, 1
    Win32::FsType = NTFS
    Win32::IsAdminUser = 1

Perl module toolchain versions installed:

    Module              Have    
    ------------------- --------
    CPAN                2.00    
    CPAN::Meta          2.141520
    Cwd                 3.47    
    ExtUtils::CBuilder  0.280216
    ExtUtils::Command   1.16    
    ExtUtils::Install   1.55    
    ExtUtils::MakeMaker 6.98    
    ExtUtils::Manifest  1.60    
    ExtUtils::ParseXS   3.24    
    File::Spec          3.47    
    JSON                2.90    
    JSON::PP            2.27203 
    Module::Build       0.4206  
    Module::Signature   0.66    
    Parse::CPAN::Meta   1.4414  
    Test::Harness       3.32    
    Test::More          1.001003
    YAML                0.98    
    YAML::Syck          1.27    
    version             0.9908  


--

Summary of my perl5 (revision 5 version 12 subversion 2) configuration:
   
  Platform:
    osname=MSWin32, osvers=5.1, archname=MSWin32-x86-multi-thread
    uname='Win32 strawberryperl 5.12.2.0 #1 Fri Nov  5 05:17:27 2010 i386'
    config_args='undef'
    hint=recommended, useposix=true, d_sigaction=undef
    useithreads=define, usemultiplicity=define
    useperlio=define, d_sfio=undef, uselargefiles=define, usesocks=undef
    use64bitint=undef, use64bitall=undef, uselongdouble=undef
    usemymalloc=n, bincompat5005=undef
  Compiler:
    cc='gcc', ccflags =' -s -O2 -DWIN32 -DHAVE_DES_FCRYPT  -DUSE_SITECUSTOMIZE -DPERL_IMPLICIT_CONTEXT -DPERL_IMPLICIT_SYS -fno-strict-aliasing -mms-bitfields -DPERL_MSVCRT_READFIX',
    optimize='-s -O2',
    cppflags='-DWIN32'
    ccversion='', gccversion='4.4.3', gccosandvers=''
    intsize=4, longsize=4, ptrsize=4, doublesize=8, byteorder=1234
    d_longlong=undef, longlongsize=8, d_longdbl=define, longdblsize=12
    ivtype='long', ivsize=4, nvtype='double', nvsize=8, Off_t='long long', lseeksize=8
    alignbytes=8, prototype=define
  Linker and Libraries:
    ld='g++', ldflags ='-s -L"C:\strawberry\perl\lib\CORE" -L"C:\strawberry\c\lib"'
    libpth=C:\strawberry\c\lib C:\strawberry\c\i686-w64-mingw32\lib
    libs=-lmoldname -lkernel32 -luser32 -lgdi32 -lwinspool -lcomdlg32 -ladvapi32 -lshell32 -lole32 -loleaut32 -lnetapi32 -luuid -lws2_32 -lmpr -lwinmm -lversion -lodbc32 -lodbccp32 -lcomctl32
    perllibs=-lmoldname -lkernel32 -luser32 -lgdi32 -lwinspool -lcomdlg32 -ladvapi32 -lshell32 -lole32 -loleaut32 -lnetapi32 -luuid -lws2_32 -lmpr -lwinmm -lversion -lodbc32 -lodbccp32 -lcomctl32
    libc=, so=dll, useshrplib=true, libperl=libperl512.a
    gnulibc_version=''
  Dynamic Linking:
    dlsrc=dl_win32.xs, dlext=dll, d_dlsymun=undef, ccdlflags=' '
    cccdlflags=' ', lddlflags='-mdll -s -L"C:\strawberry\perl\lib\CORE" -L"C:\strawberry\c\lib"'


Characteristics of this binary (from libperl): 
  Compile-time options: MULTIPLICITY PERL_DONT_CREATE_GVSV
                        PERL_IMPLICIT_CONTEXT PERL_IMPLICIT_SYS
                        PERL_MALLOC_WRAP PL_OP_SLAB_ALLOC USE_ITHREADS
                        USE_LARGE_FILES USE_PERLIO USE_PERL_ATOF
                        USE_SITECUSTOMIZE
  Built under MSWin32
  Compiled at Nov  5 2010 08:39:08
  %ENV:
    PERL5LIB="C:\strawberry\cpan\build\XML-Bare-0.53-DzoQEG/blib/arch;C:\strawberry\cpan\build\XML-Bare-0.53-DzoQEG/blib/lib"
    PERL5_CPANPLUS_IS_RUNNING="1516"
    PERL5_CPAN_IS_RUNNING="1516"
    PERL5_CPAN_IS_RUNNING_IN_RECURSION="1740,1516"
    PERL_CR_SMOKER_CURRENT="Bio-FastParsers-0.173450"
    PERL_CR_SMOKER_RUNONCE="1"
    PERL_EXTUTILS_AUTOINSTALL="--defaultdeps"
    PERL_MM_USE_DEFAULT="1"
  @INC:
    C:\strawberry\cpan\build\XML-Bare-0.53-DzoQEG/blib/arch
    C:\strawberry\cpan\build\XML-Bare-0.53-DzoQEG/blib/lib
    C:/strawberry/perl/site/lib
    C:/strawberry/perl/vendor/lib
    C:/strawberry/perl/lib
    .