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From: metabase:user:320bfe00-2aae-11df-837a-5e0a49663a4f
Subject: FAIL Bio-KEGGI-v0.1.2 v5.13.8 GNU/Linux
Date: 2011-01-20T16:15:53Z
This distribution has been tested as part of the CPAN Testers
project, supporting the Perl programming language. See
http://wiki.cpantesters.org/ for more information or email
questions to cpan-testers-discuss@perl.org
--
Dear Haizhou Liu,
This is a computer-generated report for Bio-KEGGI-v0.1.2
on perl 5.13.8, created by CPAN-Reporter-1.1803.
Thank you for uploading your work to CPAN. However, there was a problem
testing your distribution.
If you think this report is invalid, please consult the CPAN Testers Wiki
for suggestions on how to avoid getting FAIL reports for missing library
or binary dependencies, unsupported operating systems, and so on:
http://wiki.cpantesters.org/wiki/CPANAuthorNotes
Sections of this report:
* Tester comments
* Program output
* Prerequisites
* Environment and other context
------------------------------
TESTER COMMENTS
------------------------------
Additional comments from tester:
this report is from an automated smoke testing program
and was not reviewed by a human for accuracy
------------------------------
PROGRAM OUTPUT
------------------------------
Output from '/usr/bin/make test':
PERL_DL_NONLAZY=1 /home/src/perl/repoperls/installed-perls/perl/v5.13.8-388-gdc92530/bin/perl "-MExtUtils::Command::MM" "-e" "test_harness(0, 'blib/lib', 'blib/arch')" t/*.t
# Testing Bio::KEGGI v0.1.2, Perl 5.013008, /home/src/perl/repoperls/installed-perls/perl/v5.13.8-388-gdc92530/bin/perl
t/00-load.t ....... ok
t/manifest.t ...... skipped: Author tests not required for installation
# Failed test 'Pod coverage on Bio::KEGG'
# at /home/src/perl/repoperls/installed-perls/perl/v5.13.8-388-gdc92530/lib/site_perl/5.13.8/Test/Pod/Coverage.pm line 126.
# Coverage for Bio::KEGG is 81.8%, with 2 naked subroutines:
# new
# pathway
# Failed test 'Pod coverage on Bio::KEGG::gene'
# at /home/src/perl/repoperls/installed-perls/perl/v5.13.8-388-gdc92530/lib/site_perl/5.13.8/Test/Pod/Coverage.pm line 126.
# Coverage for Bio::KEGG::gene is 83.3%, with 2 naked subroutines:
# new
# type
# Failed test 'Pod coverage on Bio::KEGG::genome'
# at /home/src/perl/repoperls/installed-perls/perl/v5.13.8-388-gdc92530/lib/site_perl/5.13.8/Test/Pod/Coverage.pm line 126.
# Coverage for Bio::KEGG::genome is 90.0%, with 1 naked subroutine:
# hamap_id
# Looks like you failed 3 tests of 10.
t/pod-coverage.t ..
Dubious, test returned 3 (wstat 768, 0x300)
Failed 3/10 subtests
# Failed test 'POD test for blib/lib/Bio/KEGGI/genome.pm'
# at /home/src/perl/repoperls/installed-perls/perl/v5.13.8-388-gdc92530/lib/site_perl/5.13.8/Test/Pod.pm line 182.
# blib/lib/Bio/KEGGI/genome.pm (64): '=end' without a target? (Should be "=end NOTE")
# Looks like you failed 1 test of 10.
t/pod.t ...........
Dubious, test returned 1 (wstat 256, 0x100)
Failed 1/10 subtests
Test Summary Report
-------------------
t/pod-coverage.t (Wstat: 768 Tests: 10 Failed: 3)
Failed tests: 1, 5-6
Non-zero exit status: 3
t/pod.t (Wstat: 256 Tests: 10 Failed: 1)
Failed test: 10
Non-zero exit status: 1
Files=4, Tests=22, 1 wallclock secs ( 0.03 usr 0.01 sys + 0.56 cusr 0.04 csys = 0.64 CPU)
Result: FAIL
Failed 2/4 test programs. 4/22 subtests failed.
make: *** [test_dynamic] Error 1
------------------------------
PREREQUISITES
------------------------------
Prerequisite modules loaded:
requires:
Module Need Have
------------------- ---- -------
Switch 0 2.16
Test::More 0 0.97_01
Text::Trim 0 1.02
build_requires:
Module Need Have
------------------- ---- -------
ExtUtils::MakeMaker 0 6.57_05
configure_requires:
Module Need Have
------------------- ---- -------
ExtUtils::MakeMaker 0 6.57_05
------------------------------
ENVIRONMENT AND OTHER CONTEXT
------------------------------
Environment variables:
AUTOMATED_TESTING = 1
LANG = en_US.UTF-8
PATH = /home/sand/bin:/usr/local/bin:/usr/bin:/bin:/usr/bin/X11:/usr/games:/usr/local/perl/bin:/usr/X11/bin:/sbin:/usr/sbin
PERL5LIB =
PERL5OPT =
PERL5_CPANPLUS_IS_RUNNING = 29347
PERL5_CPAN_IS_RUNNING = 29347
PERL_MM_USE_DEFAULT = 1
SHELL = /usr/bin/zsh
TERM = screen
Perl special variables (and OS-specific diagnostics, for MSWin32):
$^X = /home/src/perl/repoperls/installed-perls/perl/v5.13.8-388-gdc92530/bin/perl
$UID/$EUID = 1001 / 1001
$GID = 1001 1001
$EGID = 1001 1001
Perl module toolchain versions installed:
Module Have
------------------- --------
CPAN 1.94_63
Cwd 3.35
ExtUtils::CBuilder 0.280201
ExtUtils::Command 1.16
ExtUtils::Install 1.55
ExtUtils::MakeMaker 6.57_05
ExtUtils::Manifest 1.58
ExtUtils::ParseXS 2.2208
File::Spec 3.33
Module::Build 0.3607
Module::Signature 0.66
Test::Harness 3.22
Test::More 0.97_01
YAML 0.72
YAML::Syck 1.17
version 0.88
--
Summary of my perl5 (revision 5 version 13 subversion 8) configuration:
Commit id: dc92530577ed67345a2e69b1f6631d95899e47f9
Platform:
osname=linux, osvers=2.6.32-5-amd64, archname=x86_64-linux-ld
uname='linux k81 2.6.32-5-amd64 #1 smp fri dec 10 15:35:08 utc 2010 x86_64 gnulinux '
config_args='-Dprefix=/home/src/perl/repoperls/installed-perls/perl/v5.13.8-388-gdc92530 -Dinstallusrbinperl=n -Uversiononly -Dusedevel -des -Ui_db -Uuseithreads -Duselongdouble'
hint=recommended, useposix=true, d_sigaction=define
useithreads=undef, usemultiplicity=undef
useperlio=define, d_sfio=undef, uselargefiles=define, usesocks=undef
use64bitint=define, use64bitall=define, uselongdouble=define
usemymalloc=n, bincompat5005=undef
Compiler:
cc='cc', ccflags ='-fno-strict-aliasing -pipe -fstack-protector -I/usr/local/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64',
optimize='-O2',
cppflags='-fno-strict-aliasing -pipe -fstack-protector -I/usr/local/include'
ccversion='', gccversion='4.4.5', gccosandvers=''
intsize=4, longsize=8, ptrsize=8, doublesize=8, byteorder=12345678
d_longlong=define, longlongsize=8, d_longdbl=define, longdblsize=16
ivtype='long', ivsize=8, nvtype='long double', nvsize=16, Off_t='off_t', lseeksize=8
alignbytes=16, prototype=define
Linker and Libraries:
ld='cc', ldflags =' -fstack-protector -L/usr/local/lib'
libpth=/usr/local/lib /lib /usr/lib /lib64 /usr/lib64
libs=-lnsl -lgdbm -ldb -ldl -lm -lcrypt -lutil -lc -lgdbm_compat
perllibs=-lnsl -ldl -lm -lcrypt -lutil -lc
libc=/lib/libc-2.11.2.so, so=so, useshrplib=false, libperl=libperl.a
gnulibc_version='2.11.2'
Dynamic Linking:
dlsrc=dl_dlopen.xs, dlext=so, d_dlsymun=undef, ccdlflags='-Wl,-E'
cccdlflags='-fPIC', lddlflags='-shared -O2 -L/usr/local/lib -fstack-protector'
Characteristics of this binary (from libperl):
Compile-time options: PERL_DONT_CREATE_GVSV PERL_MALLOC_WRAP PERL_USE_DEVEL
USE_64_BIT_ALL USE_64_BIT_INT USE_LARGE_FILES
USE_LONG_DOUBLE USE_PERLIO USE_PERL_ATOF
Built under linux
Compiled at Jan 19 2011 04:48:18
%ENV:
PERL5LIB=""
PERL5OPT=""
PERL5_CPANPLUS_IS_RUNNING="29347"
PERL5_CPAN_IS_RUNNING="29347"
PERL_MM_USE_DEFAULT="1"
@INC:
/home/src/perl/repoperls/installed-perls/perl/v5.13.8-388-gdc92530/lib/site_perl/5.13.8/x86_64-linux-ld
/home/src/perl/repoperls/installed-perls/perl/v5.13.8-388-gdc92530/lib/site_perl/5.13.8
/home/src/perl/repoperls/installed-perls/perl/v5.13.8-388-gdc92530/lib/5.13.8/x86_64-linux-ld
/home/src/perl/repoperls/installed-perls/perl/v5.13.8-388-gdc92530/lib/5.13.8
.